annotate test-data/test2_logs.txt @ 4:e64af72e1b8f draft default tip

planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_clusters_tool commit 4017d38cf327c48a6252e488ba792527dae97a70-dirty

=== CD-HIT cluster processing started ===
cluster_file: provided
annotation_file: provided
=== PARAMETERS ===
output_taxa_clusters: True
output_taxa_processed: True
simi_plot_y_min: 95.0
simi_plot_y_max: 100.0
uncertain_taxa_use_ratio: 0.5
min_to_split: 0.45
min_count_to_split: 10
min_cluster_support: 1
=== PARAMETERS END===
Loaded 622 annotated headers
Parsed 268 clusters
Similarity text summary written succesfully
Similarity mean = 99.80, std = 0.50
Similarity plot written succesfully
Count summary written succesfully
TOTAL annotated=49571, unannotated=16561, total=66132
Raw taxa per cluster written succesfully
Processed taxa (split clusters) written succesfully
=== SUMMARY ===
Clusters parsed: 268
Total reads: 66132
Annotated reads: 49571
Unannotated reads: 16561
Clusters with annotations: 29
Clusters fully unannotated: 239
Minimum cluster support for processed taxa: 1
=== TAXA SUMMARY (top 10) ===
Viridiplantae / Streptophyta / Magnoliopsida / Rosales / Cannabaceae / Humulus / Humulus lupulus: 47123 reads
Viridiplantae / Streptophyta / Magnoliopsida / Rosales / Rosaceae / Uncertain taxa / Uncertain taxa: 383 reads
Viridiplantae / Streptophyta / Magnoliopsida / Fagales / Betulaceae / Alnus / Alnus incana: 300 reads
Viridiplantae / Streptophyta / Magnoliopsida / Poales / Poaceae / Uncertain taxa / Uncertain taxa: 288 reads
Viridiplantae / Streptophyta / Magnoliopsida / Malpighiales / Salicaceae / Populus / Uncertain taxa: 224 reads
Viridiplantae / Streptophyta / Magnoliopsida / Fagales / Fagaceae / Quercus / Quercus rubra: 202 reads
Viridiplantae / Streptophyta / Magnoliopsida / Solanales / Uncertain taxa / Uncertain taxa / Uncertain taxa: 180 reads
Viridiplantae / Streptophyta / Magnoliopsida / Gentianales / Rubiaceae / Uncertain taxa / Uncertain taxa: 156 reads
Viridiplantae / Streptophyta / Magnoliopsida / Uncertain taxa / Uncertain taxa / Uncertain taxa / Uncertain taxa: 146 reads
Viridiplantae / Streptophyta / Magnoliopsida / Caryophyllales / Polygonaceae / Uncertain taxa / Uncertain taxa: 134 reads
Total unique taxa: 22
=== SIMILARITY SUMMARY ===
Mean similarity: 99.80
Std similarity: 0.50
=== CD-HIT cluster processing finished ===