comparison cdhit_analysis.py @ 3:c6981ea453ae draft default tip

planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_clusters_tool commit ef31054ae26e19eff2f1b1f6c7979e39c47c0d5b-dirty

2:706b7acdb230

Main steps:
1. Parse cd-hit-est cluster file and (optional) annotation file.
2. Process each cluster to extract similarity, taxa, and e-value information.
3. Aggregate results across clusters.
4. Generate requested outputs: text summaries, plots, and Excel reports.


Note: Uses a non-interactive matplotlib backend (Agg) for compatibility with Galaxy.
"""

import argparse
from collections import Counter, defaultdict
import os

3:c6981ea453ae

Main steps:
1. Parse cd-hit-est cluster file and (optional) annotation file.
2. Process each cluster to extract similarity, taxa, and e-value information.
3. Aggregate results across clusters.
4. Generate requested outputs: text summaries, plots, and Excel reports.
"""

import argparse
from collections import Counter, defaultdict
import os