Mercurial > repos > onnodg > cdhit_analysis

diff cdhit_analysis.sh @ 2:706b7acdb230 draft

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planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_clusters_tool commit c2020ecc91cea0c8cf7439180cf796743c838b4d-dirty
author onnodg
date Tue, 21 Oct 2025 07:54:21 +0000
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/cdhit_analysis.sh	Tue Oct 21 07:54:21 2025 +0000
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+SCRIPTDIR=$(dirname "$(readlink -f "$0")")
+python $SCRIPTDIR"/cdhit_analysis.py" "$@"
+
+# sanity check
+printf "Conda env: %s\n" "$CONDA_DEFAULT_ENV"
+printf "Python version: %s\n" "$(python --version | awk '{print $2}')"
+printf "Matplotlib version: %s\n" "$(python -c 'import matplotlib; print(matplotlib.__version__)')"
+printf "Pandas version: %s\n" "$(python -c 'import pandas; print(pandas.__version__)')"
+printf "Openpyxl version: %s\n" "$(python -c 'import openpyxl; print(openpyxl.__version__)')"
+printf "Bash version: %s\n" "${BASH_VERSION}"
+printf "SCRIPTDIR: %s\n\n" "$SCRIPTDIR"
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