Mercurial > repos > onnodg > cdhit_analysis
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planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_clusters_tool commit 4017d38cf327c48a6252e488ba792527dae97a70-dirty
| author | onnodg |
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| date | Mon, 15 Dec 2025 16:44:40 +0000 |
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=== CD-HIT cluster processing started === cluster_file: provided annotation_file: provided === PARAMETERS === output_taxa_clusters: True output_taxa_processed: True simi_plot_y_min: 95.0 simi_plot_y_max: 100.0 uncertain_taxa_use_ratio: 0.5 min_to_split: 0.45 min_count_to_split: 10 min_cluster_support: 1 === PARAMETERS END=== Loaded 810 annotated headers Parsed 514 clusters Similarity text summary written succesfully Similarity mean = 99.70, std = 0.63 Similarity plot written succesfully Count summary written succesfully TOTAL annotated=51245, unannotated=15395, total=66640 Raw taxa per cluster written succesfully Processed taxa (split clusters) written succesfully === SUMMARY === Clusters parsed: 514 Total reads: 66640 Annotated reads: 51245 Unannotated reads: 15395 Clusters with annotations: 63 Clusters fully unannotated: 451 Minimum cluster support for processed taxa: 1 === TAXA SUMMARY (top 10) === Viridiplantae / Streptophyta / Magnoliopsida / Rosales / Cannabaceae / Humulus / Uncertain taxa: 47442 reads Viridiplantae / Streptophyta / Magnoliopsida / Uncertain taxa / Uncertain taxa / Uncertain taxa / Uncertain taxa: 543 reads Viridiplantae / Streptophyta / Magnoliopsida / Malvales / Malvaceae / Tilia / Uncertain taxa: 419 reads Viridiplantae / Streptophyta / Magnoliopsida / Rosales / Rosaceae / Uncertain taxa / Uncertain taxa: 382 reads Viridiplantae / Streptophyta / Magnoliopsida / Fagales / Betulaceae / Alnus / Uncertain taxa: 301 reads Viridiplantae / Streptophyta / Magnoliopsida / Malpighiales / Salicaceae / Uncertain taxa / Uncertain taxa: 240 reads Uncertain taxa / Uncertain taxa / Uncertain taxa / Uncertain taxa / Uncertain taxa / Uncertain taxa / Uncertain taxa: 227 reads Viridiplantae / Streptophyta / Magnoliopsida / Malpighiales / Salicaceae / Populus / Uncertain taxa: 222 reads Viridiplantae / Streptophyta / Magnoliopsida / Poales / Poaceae / Uncertain taxa / Uncertain taxa: 221 reads Viridiplantae / Streptophyta / Magnoliopsida / Fagales / Fagaceae / Castanea / Uncertain taxa: 204 reads Total unique taxa: 44 === SIMILARITY SUMMARY === Mean similarity: 99.70 Std similarity: 0.63 === CD-HIT cluster processing finished ===