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comparison diamond.xml @ 53:cb440b96fb43 draft

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author p.lucas
date Thu, 06 Jun 2024 13:20:45 +0000
parents 10d2ad9d8093
children 9906fb4afc0b
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52:10d2ad9d8093 53:cb440b96fb43
6 <expand macro="stdio" /> 6 <expand macro="stdio" />
7 <expand macro="version_command" /> 7 <expand macro="version_command" />
8 <command detect_errors="aggressive"> 8 <command detect_errors="aggressive">
9 <![CDATA[ 9 <![CDATA[
10 10
11 #if $ref_db_source.db_source == "history":
12 ln -s $ref_db_source.reference_database ./database.dmnd
13 #else:
14 ln -s ${ref_db_source.index.fields.db_path} ./database.dmnd
15 #end if
16
17 &&
18 11
19 /usr/bin/diamond 12 /usr/bin/diamond
20 $method_cond.method_select 13 $method_cond.method_select
21 --quiet 14 --quiet
22 --threads "\${GALAXY_SLOTS:-12}" 15 --threads "\${GALAXY_SLOTS:-12}"