# HG changeset patch
# User p.lucas
# Date 1717680416 0
# Node ID 9906fb4afc0b718c42adc10cca186c356a4c3560
# Parent  cb440b96fb43dfc2b7b333df6f416fe7f19a973a
Uploaded

diff -r cb440b96fb43 -r 9906fb4afc0b diamond.xml
--- a/diamond.xml	Thu Jun 06 13:20:45 2024 +0000
+++ b/diamond.xml	Thu Jun 06 13:26:56 2024 +0000
@@ -160,20 +160,6 @@
             </when>
         </conditional>
         <param argument="--query" type="data" format="fasta,fastq" label="Input query file in FASTA or FASTQ format" />
-        <conditional name="ref_db_source">
-            <param name="db_source" type="select" label="Will you select a reference database from your history or use a built-in index?" help="Built-ins were indexed using default options">
-                <option value="indexed">Use a built-in index</option>
-                <option value="history">Use one from the history</option>
-            </param>
-            <when value="indexed">
-                <param name="index" type="select" label="Select a reference database" help="If your database of interest is not listed, contact your Galaxy admin">
-                    <options from_data_table="pl_diamond_database" />
-                </param>
-            </when>
-            <when value="history">
-                <param name="reference_database" argument="--db" type="data" format="dmnd" label="Select the reference database" />
-            </when>
-        </conditional>
         <conditional name="tax_cond">
             <param name="tax_select" type="select" label="Restrict search taxonomically?" help="Any taxonomic rank can be used, and only reference sequences matching one of the specified taxon ids will be searched against.">
                 <option value="no" selected="True">No</option>