comparison fasta_to_fastq.py @ 6:0649236c92ee draft default tip

Uploaded

5:c89ac5bc114c

"""

Convert fasta fle to fastq file with given score
Written by Pierrick Lucas.
Usage : python fastq_to_fastq.py -i sequences.fasta -s 40 -o output_file.fastq

"""

# Import
import argparse

from Bio import SeqIO

##### MAIN
def __main__():
  # Options :
  parser = argparse.ArgumentParser(description="""Takes a fasta file and converts it to fastq file with a fake quality score.""",
                                   epilog="""This script need few options, use -h to see it.""")
  parser.add_argument("-i", "--infile", dest="infile", help="Input fasta file.")
  parser.add_argument("-s", "--score", type=int, default=40, dest="score", help="Quality score you wanted for each base in all reads. (default: 40)")
  parser.add_argument("-o", "--outfile", dest="outfile", help="Output file in fastq format.")

6:0649236c92ee

"""

Convert fasta fle to fastq file with given score
Written by Pierrick Lucas.
Usage : python fasta_to_fastq.py -i sequences.fasta -s 40 -o output_file.fastq

"""

# Import
import argparse

from Bio import SeqIO

##### MAIN
def __main__():
  # Options :
  parser = argparse.ArgumentParser(description="""Take a fasta file and converts it to fastq file with a given quality score.""",
                                   epilog="""This script need few options, use -h to see it.""")
  parser.add_argument("-i", "--infile", dest="infile", help="Input fasta file.")
  parser.add_argument("-s", "--score", type=int, default=40, dest="score", help="Quality score you wanted for each base in all reads. (default: 40)")
  parser.add_argument("-o", "--outfile", dest="outfile", help="Output file in fastq format.")