# HG changeset patch
# User p.lucas
# Date 1723102238 0
# Node ID f8e542216aea8f831fc9c1c6555f90d73e2267ca
# Parent  fc142f5cb6f1d8efea8471f167b8c5d490efb7d0
Uploaded

diff -r fc142f5cb6f1 -r f8e542216aea Prepare_Ssuis_serotypingPipeline.py
--- a/Prepare_Ssuis_serotypingPipeline.py	Thu Aug 08 07:30:09 2024 +0000
+++ b/Prepare_Ssuis_serotypingPipeline.py	Thu Aug 08 07:30:38 2024 +0000
@@ -52,7 +52,8 @@
   f = options.f
   r = options.r
   
-  way_pipeline = "/results/anses/bin/SsuisSerotyping_pipeline/"
+  # Need to clone repo from git : https://github.com/streplab/SsuisSerotyping_pipeline.git
+  way_pipeline = "/nfs/bin/SsuisSerotyping_pipeline/"
   input_path = os.path.splitext(output2)[0]+"_input_file_test/"
   output_path = os.path.splitext(output2)[0]+"_Results/"
   os.system("mkdir -p "+input_path)