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planemo upload commit f74fd52b330cc7460d98121b9bb78c08ca915d1e
author pablocarb
date Thu, 29 Aug 2019 06:59:58 -0400
parents fe78fd6b315a
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 <!DOCTYPE doctype html>
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2 <html>
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3 <head>
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4 <meta charset="utf-8"/>
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5 <title>
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6 Viewer
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7 </title>
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8 <script id="elements">
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9 var rp_3={'nodes': [{'data': {'category': 'reactions', 'id': '<Reaction RP2>', 'value': '<Reaction RP2>', 'name': '<Reaction RP2>'}}, {'data': {'category': 'reactions', 'id': '<Reaction RP1>', 'value': '<Reaction RP1>', 'name': '<Reaction RP1>'}}, {'data': {'category': 'reactions', 'id': '<Reaction RP0>', 'value': '<Reaction RP0>', 'name': '<Reaction RP0>'}}, {'data': {'category': 'reactions', 'id': '<Reaction targetSink>', 'value': '<Reaction targetSink>', 'name': '<Reaction targetSink>'}}, {'data': {'category': 'reactant', 'name': '4-hydroxybenzoate', 'link': 'http://identifiers.org/metanetx.chemical/MNXM164', 'id': 'MNXM164__64__MNXC3', 'value': 'MNXM164__64__MNXC3'}}, {'data': {'category': 'reactant', 'name': 'H2O', 'link': 'http://identifiers.org/metanetx.chemical/MNXM2', 'id': 'MNXM2__64__MNXC3', 'value': 'MNXM2__64__MNXC3'}}, {'data': {'category': 'product', 'smiles': '[H]OC(=O)c1c([H])c([H])c([H])c([H])c1[H]', 'id': 'CMPD_0000000007__64__MNXC3', 'value': 'CMPD_0000000007__64__MNXC3', 'name': 'CMPD_0000000007__64__MNXC3'}}, {'data': {'category': 'reactant', 'name': 'NADH', 'link': 'http://identifiers.org/metanetx.chemical/MNXM10', 'id': 'MNXM10__64__MNXC3', 'value': 'MNXM10__64__MNXC3'}}, {'data': {'category': 'reactant', 'name': 'O2', 'link': 'http://identifiers.org/metanetx.chemical/MNXM4', 'id': 'MNXM4__64__MNXC3', 'value': 'MNXM4__64__MNXC3'}}, {'data': {'category': 'product', 'smiles': '[H]Oc1c([H])c([H])c([H])c([H])c1O[H]', 'id': 'CMPD_0000000003__64__MNXC3', 'value': 'CMPD_0000000003__64__MNXC3', 'name': 'CMPD_0000000003__64__MNXC3'}}, {'data': {'category': 'product', 'smiles': '[H]OC(=O)C([H])=C([H])C([H])=C([H])C(=O)O[H]', 'id': 'TARGET_0000000001__64__MNXC3', 'value': 'TARGET_0000000001__64__MNXC3', 'name': 'TARGET_0000000001__64__MNXC3'}}], 'edges': [{'data': {'source': '<Reaction RP2>', 'target': 'CMPD_0000000007__64__MNXC3'}}, {'data': {'source': '<Reaction RP1>', 'target': 'CMPD_0000000003__64__MNXC3'}}, {'data': {'source': '<Reaction RP0>', 'target': 'TARGET_0000000001__64__MNXC3'}}, {'data': {'source': 'MNXM164__64__MNXC3', 'target': '<Reaction RP2>'}}, {'data': {'source': 'MNXM2__64__MNXC3', 'target': '<Reaction RP2>'}}, {'data': {'source': 'CMPD_0000000007__64__MNXC3', 'target': '<Reaction RP1>'}}, {'data': {'source': 'MNXM10__64__MNXC3', 'target': '<Reaction RP1>'}}, {'data': {'source': 'MNXM4__64__MNXC3', 'target': '<Reaction RP1>'}}, {'data': {'source': 'MNXM4__64__MNXC3', 'target': '<Reaction RP0>'}}, {'data': {'source': 'CMPD_0000000003__64__MNXC3', 'target': '<Reaction RP0>'}}, {'data': {'source': 'TARGET_0000000001__64__MNXC3', 'target': '<Reaction targetSink>'}}]}
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10 var rp_7={'nodes': [{'data': {'category': 'reactions', 'id': '<Reaction RP2>', 'value': '<Reaction RP2>', 'name': '<Reaction RP2>'}}, {'data': {'category': 'reactions', 'id': '<Reaction RP1>', 'value': '<Reaction RP1>', 'name': '<Reaction RP1>'}}, {'data': {'category': 'reactions', 'id': '<Reaction RP0>', 'value': '<Reaction RP0>', 'name': '<Reaction RP0>'}}, {'data': {'category': 'reactions', 'id': '<Reaction targetSink>', 'value': '<Reaction targetSink>', 'name': '<Reaction targetSink>'}}, {'data': {'category': 'reactant', 'name': 'L-tyrosine', 'link': 'http://identifiers.org/metanetx.chemical/MNXM76', 'id': 'MNXM76__64__MNXC3', 'value': 'MNXM76__64__MNXC3'}}, {'data': {'category': 'product', 'smiles': '[H]Oc1c([H])c([H])c([H])c([H])c1[H]', 'id': 'CMPD_0000000009__64__MNXC3', 'value': 'CMPD_0000000009__64__MNXC3', 'name': 'CMPD_0000000009__64__MNXC3'}}, {'data': {'category': 'reactant', 'name': 'O2', 'link': 'http://identifiers.org/metanetx.chemical/MNXM4', 'id': 'MNXM4__64__MNXC3', 'value': 'MNXM4__64__MNXC3'}}, {'data': {'category': 'product', 'smiles': '[H]Oc1c([H])c([H])c([H])c([H])c1O[H]', 'id': 'CMPD_0000000003__64__MNXC3', 'value': 'CMPD_0000000003__64__MNXC3', 'name': 'CMPD_0000000003__64__MNXC3'}}, {'data': {'category': 'product', 'smiles': '[H]OC(=O)C([H])=C([H])C([H])=C([H])C(=O)O[H]', 'id': 'TARGET_0000000001__64__MNXC3', 'value': 'TARGET_0000000001__64__MNXC3', 'name': 'TARGET_0000000001__64__MNXC3'}}], 'edges': [{'data': {'source': '<Reaction RP2>', 'target': 'CMPD_0000000009__64__MNXC3'}}, {'data': {'source': '<Reaction RP1>', 'target': 'CMPD_0000000003__64__MNXC3'}}, {'data': {'source': '<Reaction RP0>', 'target': 'TARGET_0000000001__64__MNXC3'}}, {'data': {'source': 'MNXM76__64__MNXC3', 'target': '<Reaction RP2>'}}, {'data': {'source': 'CMPD_0000000009__64__MNXC3', 'target': '<Reaction RP1>'}}, {'data': {'source': 'MNXM4__64__MNXC3', 'target': '<Reaction RP1>'}}, {'data': {'source': 'MNXM4__64__MNXC3', 'target': '<Reaction RP0>'}}, {'data': {'source': 'CMPD_0000000003__64__MNXC3', 'target': '<Reaction RP0>'}}, {'data': {'source': 'TARGET_0000000001__64__MNXC3', 'target': '<Reaction targetSink>'}}]}
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11 </script>
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12 <script id="svg">
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13 </script>
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14 <script src="https://ajax.googleapis.com/ajax/libs/jquery/3.4.1/jquery.min.js">
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15 </script>
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16 <script src="cytoscape.min.js">
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17 </script>
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18 <script>
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19 function displaynet(network){
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20 var cy = cytoscape({
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21 container: $('#cy'),
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22
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23 elements:network
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24 ,
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25
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26 layout: {
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27 name: 'breadthfirst',
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28 //roots: "node[category = 'reactant']"
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29 },
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30
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31 style: [
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32 {
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33 selector: "node",
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34 style: {
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35 "background-color": '#80D0D0',
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36 "label": "data(name)",
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37 "font-size": "7px"
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38 }
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39 },
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40 {selector: "node[category='reactions']",
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41 style: {
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42 'background-color': '#FA8072',
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43 'shape': 'roundrectangle'
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44 }},
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45 {selector: "node[category='reactant']",
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46 style: {
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47 'background-color': '#52be80',
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48 }},
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49 {
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50 selector: 'edge',
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51 style: {
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52 'curve-style': 'bezier',
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53 'width': '3px',
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54 'target-arrow-shape': 'triangle',
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55 }
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56 }]
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57 });
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58
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59 cy.on('mouseover','node',function(e){
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60 var node_select=e.target;
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61 molecule=node_select.data("image");
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62 if(molecule){
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63 $("#molecule").attr('src',molecule);
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64 $("#molecule").css(
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65 {"width":"200px",
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66 "height":"200px"});}
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67 });
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68 cy.on('mouseout','node',function(e){
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69 $("#molecule").attr('src',"");
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70 $("#molecule").css({
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71 "width":"",
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72 "height":""});
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73 });
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74
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75 cy.on('tap','node',function(e){
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76 var node_select=e.target;
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77 console.log(node_select.data("name"));
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78 link=node_select.data("link");
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79 if(link){
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80 window.open(link)
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81 };
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82 });
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83 };
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84
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85 $(function() {
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86 });
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87 </script>
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88 </head>
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89 <style>
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90 #cy {
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91 width: 80%;
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92 height: 100%;
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93 position: absolute;
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94 left : 20%;
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95 }
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96
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97
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98 #molecule{
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99 position : absolute;
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100 }
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101 </style>
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102 <body>
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103 <div id="cy">
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104 </div>
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105 <img id="molecule" src=""/>
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106 <form>
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107 Choose a pathway :
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108 <input onclick="displaynet(rp_3)" type="button" value="rp_3"/>
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109 <input onclick="displaynet(rp_7)" type="button" value="rp_7"/>
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110 </form>
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111 </body>
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112 </html>