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planemo upload commit 6a252d04f4b2f79606ab6679b6a91f957e33da7b-dirty
author pablocarb
date Thu, 02 May 2019 07:16:40 -0400
parents ac027c9ace4d
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1 # galaxy_selenzyme 1 # Galaxy wrappers for SynBio Design Tools
2
3 ## galaxy_selenzyme
2 4
3 Creating a tool within Galaxy to run Selenzyme. 5 Creating a tool within Galaxy to run Selenzyme.
4 6
5 See: 7 See:
6 8
11 Plan: 13 Plan:
12 - [x] Create a basic command line tool using Python `requests` that submits a the reaction SMILES and gets the predicted sequences. 14 - [x] Create a basic command line tool using Python `requests` that submits a the reaction SMILES and gets the predicted sequences.
13 - [x] Create a Galaxy Tool XML file. 15 - [x] Create a Galaxy Tool XML file.
14 - [x] Check that the Galaxy container has `requests` installed, otherwise add to the `docker-compose` file. 16 - [x] Check that the Galaxy container has `requests` installed, otherwise add to the `docker-compose` file.
15 - [x] Mount the folder with the tool in the container. 17 - [x] Mount the folder with the tool in the container.
16 - [x] Install the tool in Galaxy. 18 - [x] Install the tool locally in Galaxy.
19 - [x] Use planemo in order to create a repository in the toolshed.
20 - [x] Register in the toolshed.
21 - [x] Install in the Galaxy container from the toolshed.
17 - [ ] Create a tool using Galaxy XML that post JSON request and receives a JSON response (no local tool running in the Galaxy server). 22 - [ ] Create a tool using Galaxy XML that post JSON request and receives a JSON response (no local tool running in the Galaxy server).
18 - [ ] Submit the purely XML tool to the [Galaxy Tool Shed](https://toolshed.g2.bx.psu.edu/). 23 - [ ] Submit the purely XML tool to the [Galaxy Tool Shed](https://toolshed.g2.bx.psu.edu/).