comparison selenzyme.xml @ 0:ac027c9ace4d draft

planemo upload commit 9e24fae395aeaca30c5bcdef80a21b7decb04042-dirty
author pablocarb
date Mon, 29 Apr 2019 09:49:36 -0400 (2019-04-29)
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1 <tool id="selenzyme" name="Selenzyme" version="0.1.0">
2 <description>enzyme sequence selection from reaction template</description>
3 <requirements>
4 <requirement type="package" version="2">requests</requirement>
5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[
7 python $__tool_directory__/toolSelenzyme.py $input1 $output1
8 ]]></command>
9 <inputs>
10 <param type="data" name="input1" format="csv" />
11 <param name="server" type="text" label="Selenzyme RES server" value="http://selenzyme.synbiochem.co.uk/REST" help="Selenzyme REST server" />
12 </inputs>
13 <outputs>
14 <data name="output1" format="csv" from_work_dir="out.csv" />
15 </outputs>
16 <help><![CDATA[
17 usage: toolSelenzyme.py [-h] [-server SERVER] infile outfile
18
19 toolSelenzyme: Enzyme sequence selection. Pablo Carbonell, SYNBIOCHEM, 2019
20
21 positional arguments:
22 infile Input csv file.
23 outfile Input csv file.
24
25 optional arguments:
26 -h, --help show this help message and exit
27 -server SERVER Selenzyme server.
28
29 ]]></help>
30 <citations>
31 <citation type="doi">10.1093/bioinformatics/bty065</citation>
32 </citations>
33 </tool>