Mercurial > repos > pablocarb > synbiodesign
comparison selenzyme.xml @ 0:ac027c9ace4d draft
planemo upload commit 9e24fae395aeaca30c5bcdef80a21b7decb04042-dirty
author | pablocarb |
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date | Mon, 29 Apr 2019 09:49:36 -0400 (2019-04-29) |
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children | b0b7deebb71e |
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1 <tool id="selenzyme" name="Selenzyme" version="0.1.0"> | |
2 <description>enzyme sequence selection from reaction template</description> | |
3 <requirements> | |
4 <requirement type="package" version="2">requests</requirement> | |
5 </requirements> | |
6 <command detect_errors="exit_code"><![CDATA[ | |
7 python $__tool_directory__/toolSelenzyme.py $input1 $output1 | |
8 ]]></command> | |
9 <inputs> | |
10 <param type="data" name="input1" format="csv" /> | |
11 <param name="server" type="text" label="Selenzyme RES server" value="http://selenzyme.synbiochem.co.uk/REST" help="Selenzyme REST server" /> | |
12 </inputs> | |
13 <outputs> | |
14 <data name="output1" format="csv" from_work_dir="out.csv" /> | |
15 </outputs> | |
16 <help><![CDATA[ | |
17 usage: toolSelenzyme.py [-h] [-server SERVER] infile outfile | |
18 | |
19 toolSelenzyme: Enzyme sequence selection. Pablo Carbonell, SYNBIOCHEM, 2019 | |
20 | |
21 positional arguments: | |
22 infile Input csv file. | |
23 outfile Input csv file. | |
24 | |
25 optional arguments: | |
26 -h, --help show this help message and exit | |
27 -server SERVER Selenzyme server. | |
28 | |
29 ]]></help> | |
30 <citations> | |
31 <citation type="doi">10.1093/bioinformatics/bty065</citation> | |
32 </citations> | |
33 </tool> |