comparison maketool.sh @ 11:bce330b97d42 draft

planemo upload commit 58fe26f452c61f1682290f662666043937943b81-dirty

10:6a1fbacdfaf5

    --requirement requests@2 \
    --example_command 'python $__tool_directory__/toolOptBioDes.py $input1 $output1 $output2 -server $server' \
    --example_input 'example.xlsx' \
    --example_output 'out.csv out2.csv' \
    --help_from_command 'python3 toolOptBioDes.py -h'
   
# Init shed repository
planemo shed_init . --force \
    --name synbiodesign \
    --owner pablocarb \

11:bce330b97d42

    --requirement requests@2 \
    --example_command 'python $__tool_directory__/toolOptBioDes.py $input1 $output1 $output2 -server $server' \
    --example_input 'example.xlsx' \
    --example_output 'out.csv out2.csv' \
    --help_from_command 'python3 toolOptBioDes.py -h'

# Generate tool backbone (additional params need to be entered manually 
planemo tool_init --force \
    --id 'rpviz' \
    --name 'rpVisualizer' \
    --description 'Pathway visualizer' \
    --requirement libsbml \
    --requirement networkx \
    --requirement beatifulsoup4 \
    --example_command 'python $__tool_directory__/toolVisualizer.py $input1 $output1' \
    --example_input 'path.sbml' \
    --example_output 'out.html' \
    --help_from_command 'python3 toolVisualizer.py -h'

   
# Init shed repository
planemo shed_init . --force \
    --name synbiodesign \
    --owner pablocarb \