diff toolOptBioDes.py @ 4:6dbb43bdf2f4 draft

planemo upload commit 6a252d04f4b2f79606ab6679b6a91f957e33da7b-dirty

--- a/toolOptBioDes.py	Thu May 02 07:23:22 2019 -0400
+++ b/toolOptBioDes.py	Thu May 02 07:46:26 2019 -0400
@@ -17,6 +17,8 @@
     parser = argparse.ArgumentParser(description='toolOptBioDes: Optimal SynBio Design. Pablo Carbonell, SYNBIOCHEM, 2019')
     parser.add_argument('infile', 
                         help='Input xlsx file (DoE specificiations).')
+    parser.add_argument('size', 
+                        help='Library size.')
     parser.add_argument('outfile', 
                         help='Output csv design file.')
     parser.add_argument('diagfile', 
@@ -30,9 +32,9 @@
     res = json.loads( r.content.decode('utf-8') )
     print( res )
     
-def sheetUpload(doefile, outfile, diagfile, url):
+def sheetUpload(doefile, size, outfile, diagfile, url):
     files = { 'file': open(doefile, 'rb' ) }
-    values = {'size': 64}
+    values = {'size': int(size)}
     r = requests.post( os.path.join(url, 'Query' ), files=files, data=values )
     res = json.loads( r.content.decode('utf-8') )
     M = res['data']['M']