diff maketool.sh @ 0:ac027c9ace4d draft

planemo upload commit 9e24fae395aeaca30c5bcdef80a21b7decb04042-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/maketool.sh	Mon Apr 29 09:49:36 2019 -0400
@@ -0,0 +1,31 @@
+#!/bin/bash
+# author: Pablo Carbonell
+# Create Selenzyme Galaxy tool using planemo.
+#    --example_input reaction.csv \
+#    --example_output out.csv \
+#    --example_command 'python $__tool_directory__/toolSelenzyme.py $input1 $output1 -server $server' \
+
+planemo tool_init --force \
+    --id 'selenzyme' \
+    --name 'Selenzyme' \
+    --description 'enzyme sequence selection from reaction template' \
+    --requirement requests@2 \
+    --example_command 'python $__tool_directory__/toolSelenzyme.py $input1 $output1' \
+    --example_input 'reaction.csv' \
+    --example_output 'out.csv' \
+    --doi 10.1093/bioinformatics/bty065 \
+    --help_from_command 'python3 toolSelenzyme.py -h'
+    
+planemo shed_init . --force \
+    --name synbiodesign \
+    --owner pablocarb \
+    --description 'BioCAD for Industrial Biotechnology' \
+    --category 'Systems Biology' \
+    --homepage_url 'https://github.com/pablocarb/galaxysynbiodesign'
+
+planemo shed_create \
+    --shed_target toolshed \
+    --shed_key_from_env TOOLSHED 
+
+planemo shed_update \
+    --check_diff --shed_target toolshed