diff selenzyme.xml @ 0:ac027c9ace4d draft

planemo upload commit 9e24fae395aeaca30c5bcdef80a21b7decb04042-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/selenzyme.xml	Mon Apr 29 09:49:36 2019 -0400
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+<tool id="selenzyme" name="Selenzyme" version="0.1.0">
+    <description>enzyme sequence selection from reaction template</description>
+    <requirements>
+        <requirement type="package" version="2">requests</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+        python $__tool_directory__/toolSelenzyme.py $input1 $output1
+    ]]></command>
+    <inputs>
+        <param type="data" name="input1" format="csv" />
+	<param name="server" type="text" label="Selenzyme RES server" value="http://selenzyme.synbiochem.co.uk/REST" help="Selenzyme REST server" />
+    </inputs>
+    <outputs>
+        <data name="output1" format="csv" from_work_dir="out.csv" />
+    </outputs>
+    <help><![CDATA[
+        usage: toolSelenzyme.py [-h] [-server SERVER] infile outfile
+
+toolSelenzyme: Enzyme sequence selection. Pablo Carbonell, SYNBIOCHEM, 2019
+
+positional arguments:
+  infile          Input csv file.
+  outfile         Input csv file.
+
+optional arguments:
+  -h, --help      show this help message and exit
+  -server SERVER  Selenzyme server.
+
+    ]]></help>
+    <citations>
+        <citation type="doi">10.1093/bioinformatics/bty065</citation>
+    </citations>
+</tool>