diff optbiodes.xml @ 30:0ad6fda90f41 draft default tip

planemo upload commit f74fd52b330cc7460d98121b9bb78c08ca915d1e

--- a/optbiodes.xml	Wed Aug 07 05:13:27 2019 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,33 +0,0 @@
-<tool id="optbiodes" name="OptBioDes" version="0.1.0">
-    <description>optimal synbio design</description>
-    <requirements>
-        <requirement type="package" version="2">requests</requirement>
-    </requirements>
-    <command detect_errors="exit_code"><![CDATA[
-        python $__tool_directory__/toolOptBioDes.py $input1 $input2 $output1 $output2 -server $server
-    ]]></command>
-    <inputs>
-        <param type="data" name="input1" format="csv" />
-        <param type="integer" name="input2" value="48" label="Library size" help="Library size" />
-    	<param name="server" type="text" label="OptBioDes RES server" value="http://optbiodes.synbiochem.co.uk/REST" help="OptBioDes REST server" />
-    </inputs>
-    <outputs>
-        <data name="output1" format="csv" from_work_dir="out1.csv" />
-        <data name="output2" format="csv" from_work_dir="out2.csv" />
-    </outputs>
-    <help><![CDATA[
-        usage: toolOptBioDes.py [-h] [-server SERVER] infile outfile diagfile
-
-toolOptBioDes: Optimal SynBio Design. Pablo Carbonell, SYNBIOCHEM, 2019
-
-positional arguments:
-  infile          Input xlsx file (DoE specificiations).
-  outfile         Output csv design file.
-  diagfile        Output csv diagnostics file.
-
-optional arguments:
-  -h, --help      show this help message and exit
-  -server SERVER  OptBioDes server.
-
-    ]]></help>
-</tool>
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