Mercurial > repos > pablocarb > synbiodesign

<!DOCTYPE doctype html>
<html>
 <head>
  <meta charset="utf-8"/>
  <title>
   Viewer
  </title>
  <script id="elements">
   var rp_3={'nodes': [{'data': {'category': 'reactions', 'id': '<Reaction RP2>', 'value': '<Reaction RP2>', 'name': '<Reaction RP2>'}}, {'data': {'category': 'reactions', 'id': '<Reaction RP1>', 'value': '<Reaction RP1>', 'name': '<Reaction RP1>'}}, {'data': {'category': 'reactions', 'id': '<Reaction RP0>', 'value': '<Reaction RP0>', 'name': '<Reaction RP0>'}}, {'data': {'category': 'reactions', 'id': '<Reaction targetSink>', 'value': '<Reaction targetSink>', 'name': '<Reaction targetSink>'}}, {'data': {'category': 'reactant', 'name': '4-hydroxybenzoate', 'link': 'http://identifiers.org/metanetx.chemical/MNXM164', 'id': 'MNXM164__64__MNXC3', 'value': 'MNXM164__64__MNXC3'}}, {'data': {'category': 'reactant', 'name': 'H2O', 'link': 'http://identifiers.org/metanetx.chemical/MNXM2', 'id': 'MNXM2__64__MNXC3', 'value': 'MNXM2__64__MNXC3'}}, {'data': {'category': 'product', 'smiles': '[H]OC(=O)c1c([H])c([H])c([H])c([H])c1[H]', 'id': 'CMPD_0000000007__64__MNXC3', 'value': 'CMPD_0000000007__64__MNXC3', 'name': 'CMPD_0000000007__64__MNXC3'}}, {'data': {'category': 'reactant', 'name': 'NADH', 'link': 'http://identifiers.org/metanetx.chemical/MNXM10', 'id': 'MNXM10__64__MNXC3', 'value': 'MNXM10__64__MNXC3'}}, {'data': {'category': 'reactant', 'name': 'O2', 'link': 'http://identifiers.org/metanetx.chemical/MNXM4', 'id': 'MNXM4__64__MNXC3', 'value': 'MNXM4__64__MNXC3'}}, {'data': {'category': 'product', 'smiles': '[H]Oc1c([H])c([H])c([H])c([H])c1O[H]', 'id': 'CMPD_0000000003__64__MNXC3', 'value': 'CMPD_0000000003__64__MNXC3', 'name': 'CMPD_0000000003__64__MNXC3'}}, {'data': {'category': 'product', 'smiles': '[H]OC(=O)C([H])=C([H])C([H])=C([H])C(=O)O[H]', 'id': 'TARGET_0000000001__64__MNXC3', 'value': 'TARGET_0000000001__64__MNXC3', 'name': 'TARGET_0000000001__64__MNXC3'}}], 'edges': [{'data': {'source': '<Reaction RP2>', 'target': 'CMPD_0000000007__64__MNXC3'}}, {'data': {'source': '<Reaction RP1>', 'target': 'CMPD_0000000003__64__MNXC3'}}, {'data': {'source': '<Reaction RP0>', 'target': 'TARGET_0000000001__64__MNXC3'}}, {'data': {'source': 'MNXM164__64__MNXC3', 'target': '<Reaction RP2>'}}, {'data': {'source': 'MNXM2__64__MNXC3', 'target': '<Reaction RP2>'}}, {'data': {'source': 'CMPD_0000000007__64__MNXC3', 'target': '<Reaction RP1>'}}, {'data': {'source': 'MNXM10__64__MNXC3', 'target': '<Reaction RP1>'}}, {'data': {'source': 'MNXM4__64__MNXC3', 'target': '<Reaction RP1>'}}, {'data': {'source': 'MNXM4__64__MNXC3', 'target': '<Reaction RP0>'}}, {'data': {'source': 'CMPD_0000000003__64__MNXC3', 'target': '<Reaction RP0>'}}, {'data': {'source': 'TARGET_0000000001__64__MNXC3', 'target': '<Reaction targetSink>'}}]}
   var rp_7={'nodes': [{'data': {'category': 'reactions', 'id': '<Reaction RP2>', 'value': '<Reaction RP2>', 'name': '<Reaction RP2>'}}, {'data': {'category': 'reactions', 'id': '<Reaction RP1>', 'value': '<Reaction RP1>', 'name': '<Reaction RP1>'}}, {'data': {'category': 'reactions', 'id': '<Reaction RP0>', 'value': '<Reaction RP0>', 'name': '<Reaction RP0>'}}, {'data': {'category': 'reactions', 'id': '<Reaction targetSink>', 'value': '<Reaction targetSink>', 'name': '<Reaction targetSink>'}}, {'data': {'category': 'reactant', 'name': 'L-tyrosine', 'link': 'http://identifiers.org/metanetx.chemical/MNXM76', 'id': 'MNXM76__64__MNXC3', 'value': 'MNXM76__64__MNXC3'}}, {'data': {'category': 'product', 'smiles': '[H]Oc1c([H])c([H])c([H])c([H])c1[H]', 'id': 'CMPD_0000000009__64__MNXC3', 'value': 'CMPD_0000000009__64__MNXC3', 'name': 'CMPD_0000000009__64__MNXC3'}}, {'data': {'category': 'reactant', 'name': 'O2', 'link': 'http://identifiers.org/metanetx.chemical/MNXM4', 'id': 'MNXM4__64__MNXC3', 'value': 'MNXM4__64__MNXC3'}}, {'data': {'category': 'product', 'smiles': '[H]Oc1c([H])c([H])c([H])c([H])c1O[H]', 'id': 'CMPD_0000000003__64__MNXC3', 'value': 'CMPD_0000000003__64__MNXC3', 'name': 'CMPD_0000000003__64__MNXC3'}}, {'data': {'category': 'product', 'smiles': '[H]OC(=O)C([H])=C([H])C([H])=C([H])C(=O)O[H]', 'id': 'TARGET_0000000001__64__MNXC3', 'value': 'TARGET_0000000001__64__MNXC3', 'name': 'TARGET_0000000001__64__MNXC3'}}], 'edges': [{'data': {'source': '<Reaction RP2>', 'target': 'CMPD_0000000009__64__MNXC3'}}, {'data': {'source': '<Reaction RP1>', 'target': 'CMPD_0000000003__64__MNXC3'}}, {'data': {'source': '<Reaction RP0>', 'target': 'TARGET_0000000001__64__MNXC3'}}, {'data': {'source': 'MNXM76__64__MNXC3', 'target': '<Reaction RP2>'}}, {'data': {'source': 'CMPD_0000000009__64__MNXC3', 'target': '<Reaction RP1>'}}, {'data': {'source': 'MNXM4__64__MNXC3', 'target': '<Reaction RP1>'}}, {'data': {'source': 'MNXM4__64__MNXC3', 'target': '<Reaction RP0>'}}, {'data': {'source': 'CMPD_0000000003__64__MNXC3', 'target': '<Reaction RP0>'}}, {'data': {'source': 'TARGET_0000000001__64__MNXC3', 'target': '<Reaction targetSink>'}}]}
  </script>
  <script id="svg">
  </script>
  <script src="https://ajax.googleapis.com/ajax/libs/jquery/3.4.1/jquery.min.js">
  </script>
  <script src="cytoscape.min.js">
  </script>
  <script>
   function displaynet(network){
      var cy = cytoscape({
        container: $('#cy'),

        elements:network
      ,

      layout: {
            name: 'breadthfirst',
            //roots: "node[category = 'reactant']"
          },

        style: [
          {
          selector: "node",
          style: {
              "background-color": '#80D0D0',
              "label": "data(name)",
              "font-size": "7px"
              }
          },
          {selector: "node[category='reactions']",
          style: {
            'background-color': '#FA8072',
            'shape': 'roundrectangle'
             }},
         {selector: "node[category='reactant']",
         style: {
           'background-color': '#52be80',
            }},
         {
          selector: 'edge',
          style: {
            'curve-style': 'bezier',
            'width': '3px',
            'target-arrow-shape': 'triangle',
          }
        }]
      });

      cy.on('mouseover','node',function(e){
        var node_select=e.target;
        molecule=node_select.data("image");
        if(molecule){
        $("#molecule").attr('src',molecule);
        $("#molecule").css(
          {"width":"200px",
           "height":"200px"});}
      });
      cy.on('mouseout','node',function(e){
        $("#molecule").attr('src',"");
        $("#molecule").css({
          "width":"",
          "height":""});
      });

      cy.on('tap','node',function(e){
        var node_select=e.target;
        console.log(node_select.data("name"));
        link=node_select.data("link");
        if(link){
          window.open(link)
        };
      });
      };

    $(function() {
    });
  </script>
 </head>
 <style>
  #cy {
        width: 80%;
        height: 100%;
        position: absolute;
        left : 20%;
    }


#molecule{
  position : absolute;
}
 </style>
 <body>
  <div id="cy">
  </div>
  <img id="molecule" src=""/>
  <form>
   Choose a pathway :
   <input onclick="displaynet(rp_3)" type="button" value="rp_3"/>
   <input onclick="displaynet(rp_7)" type="button" value="rp_7"/>
  </form>
 </body>
</html>
author	pablocarb
date	Fri, 05 Jul 2019 17:24:48 -0400
parents	fe78fd6b315a
children