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planemo upload commit 708fd9f837af7425a8986c336aab18cec7ff5b05-dirty
author pablocarb
date Fri, 02 Aug 2019 05:27:32 -0400
parents b30e3e5ee8f8
children d854b21ada0c
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<tool id="rpviz" name="rpviz" version="0.1.0" python_template_version="3.5">
    <description>Pathway visualizer</description>
    <requirements>
        <requirement type="package">requests</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
     python $__tool_directory__/toolRPViz.py $input1 $output1 -server $server
   ]]></command>
    <inputs>
        <param type="data" name="input1" format="tar" label="Input pathways"/>
	<param name="input2" type="select" value="sbml" label="Input format">
	  <option value="sbml">sbml</option>
	  <option value="csv">CSV</option>
	</param>
	<param name="input3" type="boolean" truevalue="Y" falsevalue="N" checked="false" label="Retrieve Selenzyme information" />
    	<param name="server" type="text" label="RPViz RES server" value="http://rpviz.synbiochem.co.uk/REST" help="RPviz REST server" />
    </inputs>
    <outputs>
        <data name="output1" format="html" from_work_dir="out.html" />
    </outputs>
    <help><![CDATA[
        python3 toolRPViz.py [server SERVER] inputfile outputfile --input_format $input2 --selenzyme_table  --outfolder $outputfile.extra_files_path
    ]]></help>
</tool>