Mercurial > repos > pablocarb > synbiodesign
view toolVisualizer.py @ 22:638dcd2d93bc draft
planemo upload commit 87db86a34f2d92eb2c9756bf9ee53ae2970554d5-dirty
author | pablocarb |
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date | Fri, 14 Jun 2019 12:14:23 -0400 |
parents | bce330b97d42 |
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#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Created on Mar 19 @author: Pablo Carbonell @description: Pathway visualizer. """ import argparse import os from rpviz.main import run def arguments(): parser = argparse.ArgumentParser(description='toolVisualizer: Pathway visualizer. Pablo Carbonell, SYNBIOCHEM, 2019') parser.add_argument('infile', help='Input SBML pathway file.') parser.add_argument('outfile', help='Output HTML file.') return parser def runVisualizer( infile, outfile ): run(infile,outfile) if __name__ == "__main__": parser = arguments() arg = parser.parse_args() assert os.path.exists(arg.infile) runVisualizer( arg.infile, arg.outfile )