Mercurial > repos > pablocarb > synbiodesign
view optbiodes.xml @ 26:fbf2e5072b32 draft
planemo upload commit c74b3ff2329f69ac7b309cc7d9bdf7b9d78106fb-dirty
author | pablocarb |
---|---|
date | Fri, 05 Jul 2019 17:29:50 -0400 |
parents | 6a1fbacdfaf5 |
children |
line wrap: on
line source
<tool id="optbiodes" name="OptBioDes" version="0.1.0"> <description>optimal synbio design</description> <requirements> <requirement type="package" version="2">requests</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python $__tool_directory__/toolOptBioDes.py $input1 $input2 $output1 $output2 -server $server ]]></command> <inputs> <param type="data" name="input1" format="csv" /> <param type="integer" name="input2" value="48" label="Library size" help="Library size" /> <param name="server" type="text" label="OptBioDes RES server" value="http://optbiodes.synbiochem.co.uk/REST" help="OptBioDes REST server" /> </inputs> <outputs> <data name="output1" format="csv" from_work_dir="out1.csv" /> <data name="output2" format="csv" from_work_dir="out2.csv" /> </outputs> <help><![CDATA[ usage: toolOptBioDes.py [-h] [-server SERVER] infile outfile diagfile toolOptBioDes: Optimal SynBio Design. Pablo Carbonell, SYNBIOCHEM, 2019 positional arguments: infile Input xlsx file (DoE specificiations). outfile Output csv design file. diagfile Output csv diagnostics file. optional arguments: -h, --help show this help message and exit -server SERVER OptBioDes server. ]]></help> </tool>