comparison clipkit_repo/tests/integration/expected/EOG091N44M8_aa.fa_gappy.complement @ 0:49b058e85902 draft

"planemo upload for repository https://github.com/jlsteenwyk/clipkit commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"
author padge
date Fri, 25 Mar 2022 13:04:31 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:49b058e85902
1 >200_S38|EOG091N44M8
2 ------------------------------------------------------------
3 ---------------------------------------------LLSIL----------
4 ----LWTFL---------------------------------------------------
5 -------------
6 >203_S40|EOG091N44M8
7 ------------------------------------------------------------
8 ---------------------------------------------LLSIL----------
9 ----LWTFL---------------------------------------------------
10 -------------
11 >206_S41|EOG091N44M8
12 ----KEE-----------------------------------------------------
13 ------------------------------------------------------------
14 -------------------------------------------------------K----
15 -------------
16 >207_S42|EOG091N44M8
17 ------------------------------------------------------------
18 ------------------------------------------------------------
19 ------------------------------------------------------------
20 -------------
21 >209_S43|EOG091N44M8
22 ------------------------------------------------------------
23 ------------------------------------------------------------
24 ------------------------------------------------------------
25 -------------
26 >212_S45|EOG091N44M8
27 --A---------------------------------------------------------
28 ------------------------------------------------------------
29 ------------------------------------------------------------
30 -------------
31 >215_S46|EOG091N44M8
32 ------------------------------------------------------------
33 ---------------------------------------------LLSIL----------
34 ----LWTFL---------------------------------------------------
35 -------------
36 >220_S48|EOG091N44M8
37 ----KEE-----------------------------------------------------
38 ------------------------------------------------------------
39 ------------------------------------------------------------
40 -------------
41 >231_51|EOG091N44M8
42 ------------------------------------------------------------
43 ------------------------------------------------------------
44 ------------------------------------------------------------
45 -------------
46 >232-S52|EOG091N44M8
47 ------------------------------------------------------------
48 ------------------------------------------------------------
49 ------------------------------------------------------------
50 -------------
51 >236_53|EOG091N44M8
52 ------------------------------------------------------------
53 ------------------------------------------------------------
54 ------------------------------------------------------------
55 -------------
56 >244-S54|EOG091N44M8
57 ------------------------------------------------------------
58 ------------------------------------------------------------
59 ------------------------------------------------------------
60 -------------
61 >245_S55|EOG091N44M8
62 ------------------------------------------------------------
63 ---------------------------------------------LLSIL----------
64 ----LWTFL---------------------------------------------------
65 -------------
66 >247_s46|EOG091N44M8
67 -------V----HG----------------------------------------------
68 ----------------------------------S-------------------------
69 ------------------------------------------------------------
70 -------------
71 >250_S57|EOG091N44M8
72 ------------------------------------------------------------
73 ------------------------------------------------------------
74 ------------------------------------------------------------
75 -------------
76 >252_S58|EOG091N44M8
77 -------V----HG----------------------------------------------
78 ----------------------------------S-------------------------
79 ------------------------------------------------------------
80 -------------
81 >256_S59|EOG091N44M8
82 ------------------------------------------------------------
83 ------------------------------------------------------------
84 ------------------------------------------------------------
85 -------------
86 >257_S60|EOG091N44M8
87 ------------------------------------------------------------
88 ------------------------------------------------------------
89 ------------------------------------------------------------
90 -------------
91 >258_S61|EOG091N44M8
92 ------------------------------------------------------------
93 ------------------------------------------------------------
94 ------------------------------------------------------------
95 -------------
96 >259_S62|EOG091N44M8
97 ------------------------------------------------------------
98 ------------------------------------------------------------
99 ------------------------------------------------------------
100 -------------
101 >261_S63|EOG091N44M8
102 ------------------------------------------------------------
103 ------------------------------------------------------------
104 ------------------------------------------------------------
105 -------------
106 >262_S64|EOG091N44M8
107 ------------------------------------------------------------
108 ------------------------------------------------------------
109 ------------------------------------------------------------
110 -------------
111 >267_S66|EOG091N44M8
112 ------------------------------------------------------------
113 ------------------------------------------------------------
114 ------------------------------------------------------------
115 -------------
116 >269_S67|EOG091N44M8
117 ------------------------------------------------------------
118 ------------------------------------------------------------
119 ------------------------------------------------------------
120 -------------
121 >271_S68|EOG091N44M8
122 ------------------------------------------------------------
123 ------------------------------------------------------------
124 ------------------------------------------------------------
125 -------------
126 >274_S69|EOG091N44M8
127 -------V----HG----------------------------------------------
128 ----------------------------------S-------------------------
129 ------------------------------------------------------------
130 -------------
131 >275_S70|EOG091N44M8
132 ------------------------------------------------------------
133 ------------------------------------------------------------
134 ------------------------------------------------------------
135 -------------
136 >276_S71|EOG091N44M8
137 ------------------------------------------------------------
138 ------------------------------------------------------------
139 ------------------------------------------------------------
140 -------------
141 >277_S72|EOG091N44M8
142 ------------------------------------------------------------
143 ------------------------------------------------------------
144 ------------------------------------------------------------
145 -------------
146 >278_S73|EOG091N44M8
147 ------------------------------------------------------------
148 ------------------------------------------------------------
149 ------------------------------------------------------------
150 -------------
151 >280_S74|EOG091N44M8
152 ------------------------------------------------------------
153 ------------------------------------------------------------
154 ------------------------------------------------------------
155 -------------
156 >284_S76|EOG091N44M8
157 -------V----HG----------------------------------------------
158 ----------------------------------S-------------------------
159 ------------------------------------------------------------
160 -------------
161 >285_S77|EOG091N44M8
162 ------------------------------------------------------------
163 ------------------------------------------------------------
164 ------------------------------------------------------------
165 -------------
166 >288_S78|EOG091N44M8
167 ----KEE-----------------------------------------------------
168 ------------------------------------------------------------
169 ------------------------------------------------------------
170 -------------
171 >289_S79|EOG091N44M8
172 -------V----HG----------------------------------------------
173 ----------------------------------S-------------------------
174 ------------------------------------------------------------
175 -------------
176 >Aspergillus_fumigatus_Af293_GCF_000002655.1|EOG091N44M8
177 ------------------------------------------------------------
178 ------------------------------------------------------------
179 ------------------------------------------------------------
180 -------------
181 >Aspergillus_niger_GCF_000002855.3|EOG091N44M8
182 -AA---------------------------------------------------------
183 ------------------------------------------------------------
184 ------------------------------------------------------------
185 -------------
186 >Aspergillus_oryzae_RIB40_GCF_000184455.2|EOG091N44M8
187 ------------------------------------------------------------
188 ------------------------------------------------------------
189 ------------------------------------------------------------
190 -------------
191 >Penicillium_antarcticum_GCA_002072345.1|EOG091N44M8
192 ------------------------------------------------------------
193 ------------------------------------------------------------
194 ------------------------------------------------------------
195 -------------
196 >Penicillium_biforme_FM169_GCA_000577785.1|EOG091N44M8
197 ------------------------------------------------------------
198 ------------------------------------------------------------
199 ------------------------------------------------------------
200 -------------
201 >Penicillium_brasilianum_GCA_000769745.1|EOG091N44M8
202 ------------------------------------------------------------
203 ------------------------------------PGGGHGGNI-----QNVALHSALG
204 EVAC-----YMNNGAYLNYAV---------------------------------------
205 -------------
206 >Penicillium_brasilianum_GCA_001048715.1|EOG091N44M8
207 ------------------------------------------------------------
208 ------------------------------------------------------------
209 ------------------------------------------------------------
210 -------------
211 >Penicillium_brasilianum_GCA_002016555.1|EOG091N44M8
212 ------------------------------------------------------------
213 ------------------------------------------------------------
214 ------------------------------------------------------------
215 -------------
216 >Penicillium_brasilianum_GCA_004916855.1|EOG091N44M8
217 ------------------------------------------------------------
218 ------------------------------------------------------------
219 ------------------------------------------------------------
220 -------------
221 >Penicillium_camemberti_FM_013_GCA_000513335.1|EOG091N44M8
222 ------------------------------------------------------------
223 ------------------------------------------------------------
224 ------------------------------------------------------------
225 -------------
226 >Penicillium_capsulatum_GCA_000943765.1|EOG091N44M8
227 ------------------------------------------------------------
228 ------------------------------------------------------------
229 ------------------------------------------------------------
230 -------------
231 >Penicillium_capsulatum_GCA_000943775.1|EOG091N44M8
232 ------------------------------------------------------------
233 ------------------------------------------------------------
234 ------------------------------------------------------------
235 -------------
236 >Penicillium_chrysogenum_GCA_000710275.1|EOG091N44M8
237 ------------------------------------------------------------
238 ------------------------------------------------------------
239 ------------------------------------------------------------
240 -------------
241 >Penicillium_chrysogenum_GCA_000801355.1|EOG091N44M8
242 ------------------------------------------------------------
243 ------------------------------------------------------------
244 ------------------------------------------------------------
245 -------------
246 >Penicillium_chrysogenum_GCA_002080375.1|EOG091N44M8
247 ------------------------------------------------------------
248 ------------------------------------------------------------
249 ------------------------------------------------------------
250 -------------
251 >Penicillium_chrysogenum_KF-25_GCA_000816005.1|EOG091N44M8
252 ------------------------------------------------------------
253 ------------------------------------------------------------
254 ------------------------------------------------------------
255 -------------
256 >Penicillium_chrysogenum_NCPC10086_GCA_000523475.1|EOG091N44M8
257 ------------------------------------------------------------
258 ------------------------------------------------------------
259 ------------------------------------------------------------
260 -------------
261 >Penicillium_chrysogenum_NCPC10086_GCA_001773325.1|EOG091N44M8
262 ------------------------------------------------------------
263 ------------------------------------------------------------
264 ------------------------------------------------------------
265 -------------
266 >Penicillium_citrinum_GCA_001399475.1|EOG091N44M8
267 --A---------------------------------------------------------
268 ------------------------------------------------------------
269 ------------------------------------------------------------
270 -------------
271 >Penicillium_citrinum_GCA_001950535.1|EOG091N44M8
272 --A---------------------------------------------------------
273 ------------------------------------------------------------
274 ------------------------------------------------------------
275 -------------
276 >Penicillium_commune_162_3FA|EOG091N44M8
277 ------------------------------------------------------------
278 ------------------------------------------------------------
279 ------------------------------------------------------------
280 -------------
281 >Penicillium_coprophilum_GCA_002072405.1|EOG091N44M8
282 G-----------------------------------------------------------
283 ------------------------------------------------------------
284 ------------------------------------------------------------
285 -------------
286 >Penicillium_decumbens_GCA_000226395.1|EOG091N44M8
287 ------------------------------------------------------------
288 ------------------------------------------------------------
289 ------------------------------------------------------------
290 -------------
291 >Penicillium_decumbens_GCA_002072245.1|EOG091N44M8
292 ------------------------------------------------------------
293 ------------------------------------------------------------
294 ------------------------------------------------------------
295 -------------
296 >Penicillium_digitatum_Pd01-ZJU_GCA_000485865.1|EOG091N44M8
297 ------------------------------------------------------------
298 ------------------------------------------------------------
299 ------------------------------------------------------------
300 -------------
301 >Penicillium_digitatum_PDC_102_GCA_001307865.1|EOG091N44M8
302 ------------------------------------------------------------
303 ----------------------------------------------------------LG
304 LIDG--------------------------------------------------------
305 -------------
306 >Penicillium_digitatum_PHI26_GCA_000315665.1|EOG091N44M8
307 ------------------------------------------------------------
308 ------------------------------------------------------------
309 ------------------------------------------------------------
310 -------------
311 >Penicillium_expansum_GCA_000688875.1|EOG091N44M8
312 ------------------------------------------------------------
313 ------------------------------------PGGGHGGNI-----QNVALHSALG
314 EVAC-----YMNNGAYLNYAV---------------------------------------
315 -------------
316 >Penicillium_expansum_GCA_000769735.1|EOG091N44M8
317 ------------------------------------------------------------
318 ------------------------------------PGGGHGGNI-----QNVALHSALG
319 EVAC-----YMNNGAYLNYAV---------------------------------------
320 -------------
321 >Penicillium_expansum_GCA_000769755.1|EOG091N44M8
322 ------------------------------------------------------------
323 ------------------------------------PGGGHGGNI-----QNVALHSALG
324 EVAC-----YMNNGAYLNYAV---------------------------------------
325 -------------
326 >Penicillium_expansum_GCA_001750045.2|EOG091N44M8
327 ------------------------------------------------------------
328 -------------------------------------------NI-----QNVALHSALG
329 EVAC-----YMNNGAYLNYAV---------------------------------------
330 -------------
331 >Penicillium_expansum_GCA_004302965.1|EOG091N44M8
332 ------------------------------------------------------------
333 ------------------------------------PGGGHGGNI-----QNVALHSALG
334 EVAC-----YMNNGAYLNYAV---------------------------------------
335 -------------
336 >Penicillium_expansum_NRRL_62431_GCA_000584915.1|EOG091N44M8
337 ------------------------------------------------------------
338 -------------------------------------------NI-----QNVALHSALG
339 EVAC-----YMNNGAYLNYAV---------------------------------------
340 -------------
341 >Penicillium_expansum_T01_GCA_001008385.1|EOG091N44M8
342 ------------------------------------------------------------
343 ------------------------------------PGGGHGGNI-----QNVALHSALG
344 EVAC-----YMNNGAYLNYAV---------------------------------------
345 -------------
346 >Penicillium_expansum_YT02_GCA_002072455.1|EOG091N44M8
347 ------------------------------------------------------------
348 ------------------------------------------------------------
349 ------------------------------------------------------------
350 -------------
351 >Penicillium_flavigenum_GCA_002072365.1|EOG091N44M8
352 ------------------------------------------------------------
353 ------------------------------------------------------------
354 ------------------------------------------------------------
355 -------------
356 >Penicillium_freii_GCA_001513925.1|EOG091N44M8
357 ------------------------------------------------------------
358 ------------------------------------------------------------
359 ------------------------------------------------------------
360 -------------
361 >Penicillium_fuscoglaucum_FM041_GCA_000576735.1|EOG091N44M8
362 ------------------------------------------------------------
363 ------------------------------------------------------------
364 ------------------------------------------------------------
365 -------------
366 >Penicillium_griseofulvum_GCA_001561935.1|EOG091N44M8
367 ---G--------------------------------------------------------
368 ------------------------------------------------------------
369 ------------------------------------------------------------
370 -------------
371 >Penicillium_griseofulvum_GCA_001735785.1|EOG091N44M8
372 ---G--------------------------------------------------------
373 ------------------------------------------------------------
374 ------------------------------------------------------------
375 -------------
376 >Penicillium_italicum_GCA_000769765.1|EOG091N44M8
377 ------------------------------------------------------------
378 ------------------------------------------------------------
379 ------------------------------------------------------------
380 -------------
381 >Penicillium_italicum_GCA_001008395.1|EOG091N44M8
382 ------------------------------------------------------------
383 ------------------------------------------------------------
384 ------------------------------------------------------------
385 -------------
386 >Penicillium_italicum_GCA_002116305.1|EOG091N44M8
387 ------------------------------------------------------------
388 ------------------------------------------------------------
389 ------------------------------------------------------------
390 -------------
391 >Penicillium_janthinellum_GCA_002369805.1|EOG091N44M8
392 ------------------------------------------------------------
393 ------------------------------------------------------------
394 ------------------------------------------------------------
395 -------------
396 >Penicillium_nalgiovense_FM193_GCA_000577395.2|EOG091N44M8
397 ------------------------------------------------------------
398 ------------------------------------------------------------
399 ------------------------------------------------------------
400 -------------
401 >Penicillium_nalgiovense_GCA_002072425.1|EOG091N44M8
402 ------------------------------------------------------------
403 ------------------------------------------------------------
404 ------------------------------------------------------------
405 -------------
406 >Penicillium_nordicum_GCA_000315645.2|EOG091N44M8
407 ------------------------------------------------------------
408 ------------------------------------------------------------
409 ------------------------------------------------------------
410 -------------
411 >Penicillium_nordicum_GCA_000733025.2|EOG091N44M8
412 ------------------------------------------------------------
413 ------------------------------------------------------------
414 ----LWTFL---------------------------------------------------
415 -------------
416 >Penicillium_nordicum_GCA_001278595.1|EOG091N44M8
417 ------------------------------------------------------------
418 ------------------------------------------------------------
419 ------------------------------------------------------------
420 -------------
421 >Penicillium_oxalicum_114-2_GCA_000346795.1|EOG091N44M8
422 ------------------------------------------------------------
423 ------------------------------------------------------------
424 ------------------------------------------------------------
425 -------------
426 >Penicillium_oxalicum_GCA_001723175.2|EOG091N44M8
427 ------------------------------------------------------------
428 ------------------------------------------------------------
429 ------------------------------------------------------------
430 -------------
431 >Penicillium_oxalicum_GCA_004153425.1|EOG091N44M8
432 ------------------------------------------------------------
433 ------------------------------------------------------------
434 ------------------------------------------------------------
435 -------------
436 >Penicillium_oxalicum_GCA_004521935.1|EOG091N44M8
437 ------------------------------------------------------------
438 ------------------------------------------------------------
439 ------------------------------------------------------------
440 -------------
441 >Penicillium_oxalicum_GCA_005546515.1|EOG091N44M8
442 ------------------------------------------------------------
443 ------------------------------------------------------------
444 ------------------------------------------------------------
445 -------------
446 >Penicillium_oxalicum_JU-A10-T_GCA_000383025.1|EOG091N44M8
447 ------------------------------------------------------------
448 ------------------------------------------------------------
449 ------------------------------------------------------------
450 -------------
451 >Penicillium_paneum_FM227_GCA_000577715.1|EOG091N44M8
452 A-----------------------------------------------------------
453 ------------------------------------------------------------
454 ------------------------------------------------------------
455 -------------
456 >Penicillium_paxilli_ATCC_26601_GCA_000347475.1|EOG091N44M8
457 --G---------------------------------------------------------
458 ------------------------------------------------------------
459 ------------------------------------------------------------
460 -------------
461 >Penicillium_polonicum_GCA_002072265.1|EOG091N44M8
462 ------------------------------------------------------------
463 ------------------------------------------------------------
464 ------------------------------------------------------------
465 -------------
466 >Penicillium_polonicum_GCA_003344595.1|EOG091N44M8
467 ------------------------------------------------------------
468 ------------------------------------------------------------
469 ------------------------------------------------------------
470 -------------
471 >Penicillium_roqueforti_FM164_GCA_000513255.1|EOG091N44M8
472 ------------------------------------------------------------
473 -----------------------------------A------------------------
474 ------------------------------------------------------------
475 -------------
476 >Penicillium_roqueforti_GCA_000737485.2|EOG091N44M8
477 ------------------------------------------------------------
478 ------------------------------------------------------------
479 ------------------------------------------------------------
480 -------------
481 >Penicillium_roqueforti_GCA_001599855.1|EOG091N44M8
482 ------------------------------------------------------------
483 ------------------------------------------------------------
484 ------------------------------------------------------------
485 -------------
486 >Penicillium_roqueforti_GCA_001939915.1|EOG091N44M8
487 ------------------------------------------------------------
488 -----------------------------------A------------------------
489 ------------------------------------------------------------
490 -------------
491 >Penicillium_sclerotiorum_GCA_001750025.1|EOG091N44M8
492 --A---------------------------------------------------------
493 ------------------------------------------------------------
494 ------------------------------------------------------------
495 -------------
496 >Penicillium_solitum_GCA_000952775.2|EOG091N44M8
497 ------------------------------------------------------------
498 ------------------------------------------------------------
499 ------------------------------------------------------------
500 -------------
501 >Penicillium_solitum_GCA_001750005.1|EOG091N44M8
502 ------------------------------------------------------------
503 ------------------------------------------------------------
504 ------------------------------------------------------------
505 -------------
506 >Penicillium_solitum_GCA_002072235.1|EOG091N44M8
507 ------------------------------------------------------------
508 ------------------------------------------------------------
509 ------------------------------------------------------------
510 -------------
511 >Penicillium_sp.12|EOG091N44M8
512 ------------------------------------------------------------
513 ------------------------------------------------------------
514 ------------------------------------------------------------
515 -------------
516 >Penicillium_sp._CF05_GCA_002916455.1|EOG091N44M8
517 ------------------------------------------------------------
518 ------------------------------------------------------------
519 ------------------------------------------------------------
520 -------------
521 >Penicillium_sp._MA_6036_GCA_003138045.1|EOG091N44M8
522 ----KEK-----------------------------------------------------
523 ------------------------------------------------------------
524 -------------------------------------------------------SCENF
525 KTPKNARKYSAVG
526 >Penicillium_sp._MA_6040_GCA_003138025.1|EOG091N44M8
527 ------------------------------------------------------------
528 ------------------------------------------------------------
529 ------------------------------------------------------------
530 -------------
531 >Penicillium_sp.MB|EOG091N44M8
532 ------------------------------------------------------------
533 ------------------------------------------------------------
534 ------------------------------------------------------------
535 -------------
536 >Penicillium_sp._MT2_MMC-2018_GCA_003852855.1|EOG091N44M8
537 ------------------------------------------------------------
538 ------------------------------------------------------------
539 ------------------------------------------------------------
540 -------------
541 >Penicillium_sp._occitanis_GCA_002382835.1|EOG091N44M8
542 ----AEE-----------------------------------------------------
543 ------------------------------------------------------------
544 ------------------------------------------------------------
545 -------------
546 >Penicillium_sp._occitanis_GCA_002382855.1|EOG091N44M8
547 ----AEE-----------------------------------------------------
548 ------------------------------------------------------------
549 ------------------------------------------------------------
550 -------------
551 >Penicillium_sp._SPG-F15_GCA_003800485.1|EOG091N44M8
552 ------------------------------------------------------------
553 ------------------------------------------------------------
554 ------------------------------------------------------------
555 -------------
556 >Penicillium_sp._SPG-F1_GCA_003800495.1|EOG091N44M8
557 ------------------------------------------------------------
558 ------------------------------------------------------------
559 ------------------------------------------------------------
560 -------------
561 >Penicillium_sp._W3_MMC-2018_GCA_004959885.1|EOG091N44M8
562 -------VDEHNHSSAVSIPMQPQPQPSYPQYAYSPPARQEMYPPQQPQEMYPPQQQQHV
563 YSPPITTTTHDYYNYNPHMALTPSGAAADEERYLT-------------------------
564 ---------------------RLRPYEEPKILAFRMCQNRNCDDWNLSPDEKCCF-----
565 -------------
566 >Penicillium_steckii_GCA_002072375.1|EOG091N44M8
567 ------------------------------------------------------------
568 ------------------------------------------------------------
569 ------------------------------------------------------------
570 -------------
571 >Penicillium_subrubescens_GCA_001908125.1|EOG091N44M8
572 ------------------------------------------------------------
573 ------------------------------------------------------------
574 ------------------------------------------------------------
575 -------------
576 >Penicillium_verrucosum_GCA_000970515.2|EOG091N44M8
577 ------------------------------------------------------------
578 ---------------------------------------------LLSIL----------
579 ----LWTFL---------------------------------------------------
580 -------------
581 >Penicillium_vulpinum_GCA_002072255.1|EOG091N44M8
582 --G---------------------------------------------------------
583 ------------------------------------------------------------
584 ------------------------------------------------------------
585 -------------