diff clipkit_repo/docs/other_software/index.rst @ 0:49b058e85902 draft

"planemo upload for repository https://github.com/jlsteenwyk/clipkit commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/clipkit_repo/docs/other_software/index.rst	Fri Mar 25 13:04:31 2022 +0000
@@ -0,0 +1,71 @@
+.. _other_software:
+
+
+Other software
+==============
+
+^^^^^
+
+We are grateful that you are exploring our software! If this software is of interest 
+to you, our other software will likely be too. Please see other software below.
+
+|
+
+PhyKIT
+------
+|PhyKIT|
+
+A broadly applicable command line toolkit with 30 (and counting) functions for analyzing
+and processing phylogenetic trees and multiple sequence alignments.
+
+`Publication PDF <https://jlsteenwyk.com/publication_pdfs/2021_Steenwyk_etal_Bioinformatics.pdf>`_;
+`Documentation <https://jlsteenwyk.com/PhyKIT/>`_;
+`Source code <https://github.com/JLSteenwyk/PhyKIT>`_
+
+.. |PhyKIT| image:: ../_static/img/phykit_logo.png
+   :width: 50%
+
+|
+
+orthofisher
+-----------
+|orthofisher|
+
+automated extraction of protein sequences from proteomes using profile Hidden Markov Models
+
+`Documentation <https://jlsteenwyk.com/orthofisher/>`_;
+`Source code <https://github.com/JLSteenwyk/orthofisher>`_
+
+.. |orthofisher| image:: ../_static/img/orthofisher_full_logo.jpg
+   :width: 50%
+
+|
+
+treehouse
+---------
+
+|treehouse|
+
+prune user inputted phylogenies or phylogenies in our database using an intuitive graphical
+user interface.
+
+`Publication PDF <https://jlsteenwyk.com/publication_pdfs/2019_Steenwyk_and_Rokas_BMC_Research_Notes.pdf>`_;
+`Documentation & Source code <https://github.com/JLSteenwyk/treehouse>`_
+
+.. |treehouse| image:: ../_static/img/treehouse_logo.png
+   :width: 50%
+
+|
+
+ggpubfigs
+---------
+
+|ggpubfigs|
+
+create publication ready figures that are colorblind friendly using our collection of ggplot2 themes
+
+`Zenodo record <https://zenodo.org/record/4126988#.YCK_2ZNKhlc>`_;
+`Documentation & Source code <https://github.com/JLSteenwyk/ggpubfigs>`_
+
+.. |ggpubfigs| image:: ../_static/img/ggpubfigs_logo.png
+   :width: 50%
\ No newline at end of file