diff clipkit_repo/tests/unit/test_args_parsing.py @ 0:49b058e85902 draft

"planemo upload for repository https://github.com/jlsteenwyk/clipkit commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/clipkit_repo/tests/unit/test_args_parsing.py	Fri Mar 25 13:04:31 2022 +0000
@@ -0,0 +1,68 @@
+import pytest
+from argparse import Namespace
+from clipkit.modes import TrimmingMode
+from clipkit.args_processing import process_args
+
+
[e-mail]
+def args():
+    kwargs = dict(
+        complementary=False,
+        gaps=None,
+        input="tests/integration/samples/simple.fa",
+        input_file_format=None,
+        log=False,
+        mode=None,
+        output="output/simple",
+        output_file_format=None,
+    )
+    return Namespace(**kwargs)
+
+
+class TestArgsProcessing(object):
+    def test_process_args_input_file_dne(self, args):
+        args.input = "some/file/that/doesnt/exist"
+        with pytest.raises(SystemExit):
+            process_args(args)
+
+    def test_process_args_in_equals_out(self, args):
+        args.output = args.input
+        with pytest.raises(SystemExit):
+            process_args(args)
+
+    def test_process_args_default_mode(self, args):
+        res = process_args(args)
+        assert res["mode"] == TrimmingMode.smart_gap
+
+    def test_process_args_default_complementary(self, args):
+        args.complementary = None
+        res = process_args(args)
+        assert res["complement"] is False
+
+    def test_process_args_default_gaps(self, args):
+        res = process_args(args)
+        assert res["gaps"] == 0.9
+
+    def test_process_args_default_use_logs(self, args):
+        args.log = None
+        res = process_args(args)
+        assert res["use_log"] is False
+
+    def test_process_args_default_output_file(self, args):
+        args.output = None
+        res = process_args(args)
+        assert res["output_file"] == f"{args.input}.clipkit"
+
+    def test_process_args_expected_keywords(self, args):
+        res = process_args(args)
+        expected_keys = [
+            "input_file",
+            "output_file",
+            "input_file_format",
+            "output_file_format",
+            "complement",
+            "gaps",
+            "mode",
+            "use_log",
+        ]
+        assert sorted(res.keys()) == sorted(expected_keys)