Mercurial > repos > padge > clipkit

directory /clipkit_repo/tests/integration/expected/ @ 0:49b058e85902 draft

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file 12_YIL115C_Anc_2.253_aa_aln.clipkit_kpi_smart_gaps 12912 -rw-r--r--
file 12_YIL115C_Anc_2.253_aa_aln.clipkit_kpic_smart_gaps 14796 -rw-r--r--
file 12_YIL115C_Anc_2.253_aa_aln.clipkit_smart_gaps 21672 -rw-r--r--
file 12_YIL115C_Anc_2.253_aa_aln.fasta_gappy 21672 -rw-r--r--
file 12_YIL115C_Anc_2.253_aa_aln.fasta_gappy.complement 4308 -rw-r--r--
file 12_YIL115C_Anc_2.253_aa_aln.fasta_kpi 12912 -rw-r--r--
file 12_YIL115C_Anc_2.253_aa_aln.fasta_kpi_gappy 12912 -rw-r--r--
file 12_YIL115C_Anc_2.253_aa_aln.fasta_kpic 14796 -rw-r--r--
file 12_YIL115C_Anc_2.253_aa_aln.fasta_kpic_gappy 14796 -rw-r--r--
file 12_YIL115C_Anc_2.253_codon_aln.clipkit_kpi_smart_gaps 40812 -rw-r--r--
file 12_YIL115C_Anc_2.253_codon_aln.clipkit_kpic_smart_gaps 49620 -rw-r--r--
file 12_YIL115C_Anc_2.253_codon_aln.clipkit_smart_gaps 64860 -rw-r--r--
file 12_YIL115C_Anc_2.253_codon_aln.fasta 64860 -rw-r--r--
file 12_YIL115C_Anc_2.253_codon_aln.fasta.clipkit 64860 -rw-r--r--
file 12_YIL115C_Anc_2.253_codon_aln.fasta.clipkit.log 175169 -rw-r--r--
file 12_YIL115C_Anc_2.253_codon_aln.fasta_gappy 64860 -rw-r--r--
file 12_YIL115C_Anc_2.253_codon_aln.fasta_gappy_custom_gaps 47184 -rw-r--r--
file 12_YIL115C_Anc_2.253_codon_aln.fasta_kpi 40812 -rw-r--r--
file 12_YIL115C_Anc_2.253_codon_aln.fasta_kpi_gappy 40812 -rw-r--r--
file 12_YIL115C_Anc_2.253_codon_aln.fasta_kpi_gappy_custom_gaps 36192 -rw-r--r--
file 12_YIL115C_Anc_2.253_codon_aln.fasta_kpic 49620 -rw-r--r--
file 12_YIL115C_Anc_2.253_codon_aln.fasta_kpic_gappy 49620 -rw-r--r--
file 24_ENSG00000163519_aa_aln.clipkit_kpi_smart_gaps 3792 -rw-r--r--
file 24_ENSG00000163519_aa_aln.clipkit_kpic_smart_gaps 4248 -rw-r--r--
file 24_ENSG00000163519_aa_aln.clipkit_smart_gaps 5184 -rw-r--r--
file 24_ENSG00000163519_aa_aln.fasta_gappy 4968 -rw-r--r--
file 24_ENSG00000163519_aa_aln.fasta_kpi 3792 -rw-r--r--
file 24_ENSG00000163519_aa_aln.fasta_kpi_gappy 3792 -rw-r--r--
file 24_ENSG00000163519_aa_aln.fasta_kpic 4248 -rw-r--r--
file 24_ENSG00000163519_aa_aln.fasta_kpic_gappy 4224 -rw-r--r--
file 24_ENSG00000163519_codon_aln.clipkit_kpi_smart_gaps 10032 -rw-r--r--
file 24_ENSG00000163519_codon_aln.clipkit_kpic_smart_gaps 11616 -rw-r--r--
file 24_ENSG00000163519_codon_aln.clipkit_smart_gaps 15240 -rw-r--r--
file 24_ENSG00000163519_codon_aln.fasta_gappy 14568 -rw-r--r--
file 24_ENSG00000163519_codon_aln.fasta_gappy_custom_gaps 13848 -rw-r--r--
file 24_ENSG00000163519_codon_aln.fasta_kpi 10032 -rw-r--r--
file 24_ENSG00000163519_codon_aln.fasta_kpi_gappy 10032 -rw-r--r--
file 24_ENSG00000163519_codon_aln.fasta_kpi_gappy_custom_gaps 9816 -rw-r--r--
file 24_ENSG00000163519_codon_aln.fasta_kpic 11616 -rw-r--r--
file 24_ENSG00000163519_codon_aln.fasta_kpic_gappy 11496 -rw-r--r--
file EOG091N44M8_aa.clipkit_kpi_smart_gaps 24113 -rw-r--r--
file EOG091N44M8_aa.clipkit_kpic_smart_gaps 72434 -rw-r--r--
file EOG091N44M8_aa.clipkit_smart_gaps 99227 -rw-r--r--
file EOG091N44M8_aa.fa_gappy 104141 -rw-r--r--
file EOG091N44M8_aa.fa_gappy.complement 28091 -rw-r--r--
file EOG091N44M8_aa.fa_kpi 27389 -rw-r--r--
file EOG091N44M8_aa.fa_kpi_gappy 27155 -rw-r--r--
file EOG091N44M8_aa.fa_kpic 82145 -rw-r--r--
file EOG091N44M8_aa.fa_kpic_gappy 76412 -rw-r--r--
file EOG091N44M8_nt.clipkit_kpi_smart_gaps 80624 -rw-r--r--
file EOG091N44M8_nt.clipkit_kpic_smart_gaps 223598 -rw-r--r--
file EOG091N44M8_nt.clipkit_smart_gaps 287363 -rw-r--r--
file EOG091N44M8_nt.fa.clipkit 302339 -rw-r--r--
file EOG091N44M8_nt.fa.clipkit.log 105211 -rw-r--r--
file EOG091N44M8_nt.fa_gappy 302339 -rw-r--r--
file EOG091N44M8_nt.fa_gappy_custom_gaps 42599 -rw-r--r--
file EOG091N44M8_nt.fa_kpi 88229 -rw-r--r--
file EOG091N44M8_nt.fa_kpi_gappy 87527 -rw-r--r--
file EOG091N44M8_nt.fa_kpi_gappy_custom_gaps 24698 -rw-r--r--
file EOG091N44M8_nt.fa_kpic 255071 -rw-r--r--
file EOG091N44M8_nt.fa_kpic_gappy 236936 -rw-r--r--
file EOG092C0CZK_aa_aln.clipkit_kpi_smart_gaps 14313543 -rw-r--r--
file EOG092C0CZK_aa_aln.clipkit_kpic_smart_gaps 15874311 -rw-r--r--
file EOG092C0CZK_aa_aln.clipkit_smart_gaps 26048863 -rw-r--r--
file EOG092C0CZK_aa_aln.fasta_gappy 2826527 -rw-r--r--
file EOG092C0CZK_aa_aln.fasta_gappy_custom_gaps 2062401 -rw-r--r--
file EOG092C0CZK_aa_aln.fasta_kpi 14313543 -rw-r--r--
file EOG092C0CZK_aa_aln.fasta_kpi_gappy 2822093 -rw-r--r--
file EOG092C0CZK_aa_aln.fasta_kpi_gappy_custom_gaps 2057967 -rw-r--r--
file EOG092C0CZK_aa_aln.fasta_kpic 18044015 -rw-r--r--
file EOG092C0CZK_aa_aln.fasta_kpic_gappy 2822093 -rw-r--r--
file EOG092C4VOX_aa_aln.clipkit_kpi_smart_gaps 4834159 -rw-r--r--
file EOG092C4VOX_aa_aln.clipkit_kpic_smart_gaps 6690079 -rw-r--r--
file EOG092C4VOX_aa_aln.clipkit_smart_gaps 11534119 -rw-r--r--
file EOG092C4VOX_aa_aln.fasta_gappy 482959 -rw-r--r--
file EOG092C4VOX_aa_aln.fasta_gappy_custom_gaps 329039 -rw-r--r--
file EOG092C4VOX_aa_aln.fasta_kpi 4834159 -rw-r--r--
file EOG092C4VOX_aa_aln.fasta_kpi_gappy 468159 -rw-r--r--
file EOG092C4VOX_aa_aln.fasta_kpi_gappy_custom_gaps 314239 -rw-r--r--
file EOG092C4VOX_aa_aln.fasta_kpic 6690079 -rw-r--r--
file EOG092C4VOX_aa_aln.fasta_kpic_gappy 471119 -rw-r--r--
file simple.clustal 264 -rw-r--r--
file simple.fa.clipkit 50 -rw-r--r--
file simple.fa.clipkit.log 103 -rw-r--r--
file simple.fa_gappy 50 -rw-r--r--
file simple.fa_gappy.complement 15 -rw-r--r--
file simple.fa_gappy_gaps_set_to_0.2 40 -rw-r--r--
file simple.fa_kpi 35 -rw-r--r--
file simple.fa_kpi_gappy 35 -rw-r--r--
file simple.fa_kpi_gappy_gaps_set_to_0.2 35 -rw-r--r--
file simple.fa_kpi_smart_gaps 35 -rw-r--r--
file simple.fa_kpic 40 -rw-r--r--
file simple.fa_kpic_gappy 40 -rw-r--r--
file simple.fa_kpic_smart_gaps 40 -rw-r--r--
file simple.fa_smart_gaps 45 -rw-r--r--
file simple.maf 519 -rw-r--r--
file simple.mauve 309 -rw-r--r--
file simple.phylip 95 -rw-r--r--
file simple.phylip-relaxed 55 -rw-r--r--
file simple.phylip-sequential 90 -rw-r--r--
file simple.stockholm 134 -rw-r--r--
file simple_long_description.clustal 264 -rw-r--r--
file simple_long_description.fa.clipkit 105 -rw-r--r--
file simple_long_description.fa.clipkit.log 103 -rw-r--r--
file simple_long_description.fa_gappy 105 -rw-r--r--
file simple_long_description.fa_gappy.complement 70 -rw-r--r--
file simple_long_description.fa_kpi 90 -rw-r--r--
file simple_long_description.fa_kpi_gappy 90 -rw-r--r--
file simple_long_description.fa_kpi_smart_gaps 90 -rw-r--r--
file simple_long_description.fa_kpic 95 -rw-r--r--
file simple_long_description.fa_kpic_gappy 95 -rw-r--r--
file simple_long_description.fa_kpic_smart_gaps 95 -rw-r--r--
file simple_long_description.fa_smart_gaps 100 -rw-r--r--
file simple_long_description.maf 519 -rw-r--r--
file simple_long_description.mauve 364 -rw-r--r--
file simple_long_description.phylip 95 -rw-r--r--
file simple_long_description.phylip-relaxed 0 -rw-r--r--
file simple_long_description.phylip-sequential 90 -rw-r--r--
file simple_long_description.stockholm 299 -rw-r--r--