Mercurial > repos > padge > trimal
diff trimal_repo/dataset/example.033.AA.bctoNOG.ENOG41099VK.fasta @ 0:b15a3147e604 draft
"planemo upload for repository https://github.com/inab/trimal commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"
| author | padge |
|---|---|
| date | Fri, 25 Mar 2022 17:10:43 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/trimal_repo/dataset/example.033.AA.bctoNOG.ENOG41099VK.fasta Fri Mar 25 17:10:43 2022 +0000 @@ -0,0 +1,9792 @@ +>760192.Halhy_5399 +-------------------M------------------------------ +-------------------------------------------------- +------------------------------------------------RP +HNFK---------------------------------------------- +----------------------------------A-C--F----L-VL-- +------F-L-----------LGMAN------LQ---AQ------------ +--------TT----------F----R-----------GLMRKADQLFETY +AFAPAVDVYRQA--LE---KD----------------------------- +AT--DPDALGRLAECYRYLN-RLDEAEATYLKLIRGRK----Y------- +---E-----------DRQILLYAHCLKGLGRYDEAKVYYLSYAKINP--- +----TVG--------NQF-A----QS-CDF-AKA-N-LNLP-T-VYGLSN +---E--R-VNSSSSD-FGPAFL-N-D----QLVFSSLRT----------- +--E-----------------------G-Q-TFSSTKS-----S-LYSSV- +---------------MATD-----------------G-S----------- +-------------------------L-------QT--------------- +---------------------------------PIV-VR----PG----I +S---DFSIGPATFSSDGRNAATTKN-NFT----P----G---V--RQI-- +-PGS--GLDLSLILAD--VNFN-----S--------------SWYNERTF +PN-N-D-TKGRTGFPCLTPDG----------------------------- +---NALFFASDR--EG--------GFGG--------WDLYLS---YKEGA +N-WTKPINLGPAVNTPGDEITPYF--DGLN-LYFASDYH-L-GFGGFDVF +MA---E-----------------Q--G-E--------GR--WLK-STNLG +QPVNSSADDYGMIMD-S-----------YRNF-GYMVSNR--SGG----K +GM---------EDIYRVV-------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------KGGAP------------------------VVTD---- +-----PG-NPNPVNPNTGRTRIKVFSGSDG-MALPNASVDL-----T--N +C-M------RG---SS-NYI----LLTD-------GQGYVELPVGAGTEC +EVVVRADGYMQLRGSLSAYFAPNRDIEIPLTKSGEEYYGRVVNSNTREFI +PNAQITARNTYTGTITRTTSDYSGNY--VL-S------LS-RN--TP-YT +ITY----SAP---NFNEE-----------T--RN---------------- +---------------------I-----NVL-NG-S-DR-TV-------L- +GV--------------LSMVPNAWNP-N-PN-P-------VNP------- +-----------NPINP---------NPGNT-GTQLE-------------- +-------------------------------------------------- +------------------------RP---GF---------------AI-- +------------------------------Q------VS----AVSGQ-- +-PD-LSKFNNLR--SIASVY------------------------------ +---------------------------AKNEAGKYKIKVGNFPTREEAQR +QLE---NVKRMGYTGAFIVTDDGFSLGGGTAVAPAVPDPNPPVTTNPPVN +TGGRFMIQLGAYRDPRS-FNGTRL-AGMG--TIQDRPRADLTVKLLCCFS +S--------A-----------A------------DAY------------- +--NALPRVQQAGFSGAFVVEDLNGQLVRAK-------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +---------------------------------------------- +>269798.CHU_2606 +-------------------------------------------------- +-------------------------------------------------- +------------------------------------------------MK +YLAF---------------------------------------------- +------------------------------------S---I---V----- +-FILTA-------F-----------------T----R------------- +---V---TAQNLDGIDKSLSL---------------SKMKTRARIAEETG +DIYTALFYYEEV--VR------------------------ND-------- +S--SDLKALYQVAEMQRFTR-NYKAAEVTYGKIHEI---A-AAD------ +---Y-----------PLAQYYQGLMQKMTGRYEDAKQTFSEFRKNSAALA +D-K-TFK--------AT-LARDIS-G-CDS-GIT-Y-RDFP-Q-NTQIKN +-A-GK-S-VNFPHTE-FSPVILDS---T--TLAFGSLR-I--D------- +-SVI--------------YYD-----T-R-GEHYEKQ--PVRQ-LY-EAK +-------K---VK-G----------------------------------- +-------------------------------------------------- +-------QW-------------------V-E--KGL-L-----EA----I +NDP-AMDMGNFVYSPTTDRYYFTKC-TKNH-------------------- +--HG--KVSCAIYYSE--R--------V-S-G----------KWSHPSKL +PD-PINIEGYTATQPTIVIDTTSSSAATTTPKNMPPRKTGGNKPVPKPVV +NTIEYLYFVSDR--PK--------GKGG--------LDIWYT-SYNASK- +KTWNEPTNL-AVANTPETECTPFYHVPTQT-LYFSSNGL-V-NAGGLDIY 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+-------------------------------------------------- +------IQ-------KG-ISAKQIQ-AKG--YGETKPIA------SNIN- +------------------------------------------------PD +-GSENEIGRSINRRTEFLISK----------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +---------------------------------------------- +>485918.Cpin_2183 +-------------------------------------------------- +-------------------------------------------------- +------------------------------------------------ML +RRC----------------------------------------------- +----------------------------------------Y---A--I-- +-LLC----T-------T-L------------T----V-PVML--YGQEQ- +---------K---------------------------SVRVRADEAFERQ +EYAVAASLYGRI--IN---K----------------------------KK 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+-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +---------------------------------------------- +>694427.Palpr_1973 +-------------------------------------------------- +-------------------------------------------------- +------------------------------------------MT----TV +RAIV-----------------------------L---------------- +------------I----------------------------IL-A--F-- +-V-----------S--ILGLS--VNGQTTTEG----V-------SL---- +---------S----------A---------------SGVIKKGDDAYKVS +NLTLAEAYYKQYITVT-----S----------------E--S-------- +E--VPAIVWLKLADCYWQLR-EFDKCLTMYESMFKY--NHPKL------- +---G-----------NKDNIRLSELYARTKDYANAYKWLKGIPGYELK-- +--------------AE--GY---N-D-KKK-RIE-M-EKDS-D-CWEVTR +---L---DINPNYRM-FAPTLV-D-S----VLLFSSNR-PSV-------- +------------------------PKN-Q-SADWNGI--AASQ-LWQ--- +----ISLT---PG-PK-ET------G--------STTQPPHDRMEFVKNE 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+-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +----SSHGILIRNCTNDTPGSEL----------FLNKL----SL---GT- +----------AW--QMDTIYYDFDKWDIQPVAYSMLD-SIV---SLLK-S +YTMMHVEIASYTDKRGTVEYNLWLSQQRANAVVNYI-------------- +-------------------------------------------------- +------VR-------Q-GVDAGRIK-ARG--YGKNRLIV------GDPS- +---------------------------------D-I-------------- +--SDREKIDQINRRSEIKVTGFEYTPDKSMQPVSDNTKYKQGEV------ +--I-DP-N--S--L---------------------------P-DN--FF- +-------------------------------------------------- +------A------------------------------------------- +------------------------PEF----------------------- +---------------------------------------PFP-ENQKK-- +---------------------------------------------- +>694427.Palpr_1083 +-------------------------------------------------- +-------------------------------------------------- +------------------------------------------MNHKS-RY +SILM-----------------------------M-----T---------- +----------IIL----------------------------LL-T--W-- +-I-----------N-----TI--FSQNTKPKT----S-------RS---- +---------K----------A---------------IEMLQRADAQYNNS +SYSVAAKDYEE--YLI-----Q----------------D--G-------- +S--HPETVLSKLADCYYQMR-ANDNALRVYKLLFKN--GKEGA------- +---T-----------ELQKIRVGELYARHGMYQQAADWLKDVKGYSAK-- +--------------AS--VY---N-S-AIS-LDS-L-KKDS-L-NWKIGF +---L---NVNTPYRD-YSPVLI-D-S----VLFFTSNK-PLS-------- +------------------------VKK-Q-VSLWDNF--CYTS-LHK--- +----VELN---KI-KS-EPIGAPIAGSFLAKKETKGVLSKSVAPQYEGAD +A----KDMESELY---------FM-------------------------- +---------------------TDRRYMW--N--ESKDT-LGSVVK---GL +E-KIDFNVTGIALDNN-SRVYFSANY-SQ----N------------R--- +--KSI--NRVRLMEGM---------Y-A-S-N----------RITNIRPL +PF-G-DNKSYSVMLPTVNE------------------------------D +G--SVLVFCSDM--PK-G-------KGK--------MDLYFSIRNAKTH- 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+-----------KDFQA--------------------------LILG---- +-----CD---------------------GE-QLTGNLEVSL-----M--E +G--------SD---RI-NVE----IVQD------G--------------- +--------------------------------------------K----- +-----------------------GKL--EA-S------VA-PE--ED-FE +IVI----KKD---GYFS----------IHD--KS---------------- +---------------------L-----ST-KGL--KET-SLE--KTY-QM +VR-------------------------V-P----------YN-------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +---------TTA--YVDLVFYNLDESAIREDAKPSLD-KVA---ELLK-S +YSFLNIAVRSHTDSRASEEYNEALSERRADAVRDYL-------------- +-------------------------------------------------- +------GQ-------FG-IARSRI-EASW--FGEKEPTN------NCG-- +---------------------D------------GV-------------- +--PCPEDQHQVNRRTELLLLAFPEEGKAYQLPPEMQGLDLCDVS------ +-------NI-Q------LP-----ADLPTIYFGFDQASLSVN-D---MMA 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+---------------------I-----ST-KGF--EGD-TLK--REY-KL +IP-------------------------I-P----------YQ-------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +---------LPV--YVDIVYYDLDKYQIREDAKPVLD-KLG---ELMN-R +YEFLDLLVGSHTDSRASDEYNITLSNNRAEAVTEYM-------------- +-------------------------------------------------- +------AQ-------YN-IPAERI-RLEW--FGEQQLVN------DCG-- +---------------------D------------GV-------------- +--PCPETDHQLNRRSELVLEAFSDPSKQYEIPEELKDKDFCDPE------ +-------DL-F------TQIQDEIAQIPTIYFDFDKSMLRSV-H---KKE +LERTAIMLK--RMPNLMLYIE---GHTDQRGDDAYNQSL----SERRADA +VKAYLTK------------------------------------------- +------------------------RGI----------------------- +---------------------------------------E-GERMEETWF +GETKPVNDCSELDCTSAMHQLNRRTELRVGKSQFTYSGRQKKVDVM +>388413.ALPR1_21078 +--------------M-VLIM-KKT-------------------------- +-------------------------------------------------- +-------------------------------------------------- +-------------------------------------------------- +---------------------------------LT-IL------------ +--S---IAA---A---M---T--L--------VTVGTT------------ +---E----AQ---------------K-----------SKIRYADEQMELM +NYQHAVEVYQEA--YA-------------------------K-------- +K--PTYEAAKKTAQAYEVLR-DYDNSYDWWKTTVSE--YD--E------- +-A-T-----------PGDYMQLLRYGQLTDQLSEAKSILES-KGVSG--- +-------------------------D-SIQ-VEE-LLNVQS-RRKLKVEG +---VE-G-LNSSGSD-FEMAVD-GSG----NRYFVSDR-GGT--YPS--K +MPSL-RI----DG-RNKI-FS-----E-E-KQDYTDR--EYFS-VY--KQ +D----------TE-----G------------------------------- +-------------------------------------------------- +------------------------------N--VSE-VV----SN----I +P-D-TYNFSDPSFAKESGMLFYSVTR-GI----T----K----V-KKT-- +-RDI--VVQPEIYYSK--V--N-----E-D-G----------TLTGFTAV +PF-N-DSIGYAVMNPYVDEAA----------------------------- 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+---------LPV--YVDIVYYDLDKYQIREDAKPVLD-KLG---ELMN-R +YEFLDLLVGSHTDSRASDEYNITLSNNRAEAVTEYM-------------- +-------------------------------------------------- +------AQ-------YN-IPAERI-RLEW--FGEQQLVN------DCG-- +---------------------D------------GV-------------- +--PCPETDHQLNRRSELVLEAFSDPSKQYEIPEELKDKDFCDPE------ +-------DL-F------TQIQDEIAQIPTIYFDFDKSMLRSV-H---KKE +LERTAIMLK--RMPNLMLYIE---GHTDQRGDDAYNQSL----SERRADA +VKAYLTK------------------------------------------- +------------------------RGI----------------------- +---------------------------------------E-GERMEETWF +GETKPVNDCSELDCTSAMHQLNRRTELRVGKSQFTYSGRQKKVDVM +>755732.Fluta_2650 +-------------------------------------------------- +--------------------------------------MIVRPTT----- +----------------------------KLIE-VGLFN--YCV-----MK +LCKS---------------------------------------------- +------------T---------------------------T---V--L-- +-I-FLF--P----F--L-S------------F------SQYD--ENRVSE 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