diff trimal_repo/dataset/example.053.AA.bctoNOG.ENOG4109CVC.fasta @ 0:b15a3147e604 draft

"planemo upload for repository https://github.com/inab/trimal commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/trimal_repo/dataset/example.053.AA.bctoNOG.ENOG4109CVC.fasta	Fri Mar 25 17:10:43 2022 +0000
@@ -0,0 +1,256 @@
+>865938.Weevi_1634
+------------------MIW----------------------VLVLFIF
+HWYASLFFQTFFHHRYAAHAMFQMSPFMEKVFHVLSFIFQGSSYLSPYAY
+GVMHRMHHAYADTEKDPHSPLFDKDIFNMM-WRTRLVYNEIDRNEVEVQQ
+KFKKG--VPAWRSFDKIAENNWVRASWAIIYILI-------YLAI-----
+-DAPL-----WT-FFVFIPLHILMSPV---HGV-VVNWFSHKYGYRNFEV
+NDTSTNFLAKDFLMWGECLHNNHHKFGGRPNFA--VKKGEIDPMFPIIKL
+MAKANII-QFKPGRLDTEYM-----------------------
+>700598.Niako_1252
+-------------------MW----------------------VLIIFIA
+IWYSSLFCQTFFQHRYAAHQAFTMNKFWERTFYIFTYLTQGSSYLSPRAY
+AIMHRMHHAYTDTEKDPHSPEYSRNMLQMM-ARTRQIYSSIYKGEYEVEE
+QFTRNL--PDWPAFDKWAHSTFSRICWILGYTVI-------FLWL-----
+--SQS-----LW-CLLLLPFVIVMGPL---HGA-IINWFAHKYGYTNFKL
+KNTSQNLFSVDFLMLGESYHNNHHKSPSAINFG--KRWHEVDPVYPVIRF
+LASLRII-TLRNDKHKTKNSR----------------------
+>743722.Sph21_4485
+-------------------MV----------------------IFIFFIG
+LWYLSLFSQTFFQHRYAAHGSFTMSKFWERFFFIFAYLTQGSSYMSARAY
+AIMHRMHHAYTDTEKDPHSPRFSSNIFSMM-WRTRNIYGNIVNNKEPIEI
+RFLKNL--PEWKGFDRWAHSGVSRLLWVAAYFAF-------FLFF-----
+--ANT-----YW-WFLLLPIVITMGAF---HGA-IVNWFAHKYGYINFRL
+RNTAKNLLVIDVLMLGESYHNNHHKHPSSVNFG--NRWHEIDPVYPIIVL
+LKWLRII-RFPKLTPVI--------------------------
+>485918.Cpin_4336
+-------------------MV----------------------IAIFFIS
+IWYLSLFSQTFFQHRYAAHGAFTMNKAWERFFFIVTYITQGSSYMSPKAY
+GIMHRLHHAHTDTPLDPHSPSNSSDIFSMM-WNTRKVYQDILHDRTVVEE
+RYLKNL--PSWDGFDRFANGGFSRLLWVVLYILF-------FVAF-----
+--ATS-----PW-QYLLLPIVVSMGAF---HGA-IVNWFAHKYGYINFKL
+KNTSMNLLFVDVLMLGESYHNNHHKHPSSVNFG--RRWYEIDPVYYVIRT
+LSYFKII-RLVNTSKISPAVAH---------------------
+>485918.Cpin_4048
+------------------MTA----------------------ILIFFFS
+HWFLSLFFHTFFLHRYASHQMYTTSKGWERVFYFCTWFFQGTSFLVPRAY
+GSMHRMHHEFSDTEHDPHSPHFFKDVWSMM-WQTRKLYNDIYHKKVVLDE
+KFTKNPPLPVWDALDRFGDFTATRLAWAGIYIAF-------YVAF-----
+--APA-----WY-WYLLLPIHFLIGPV---QGA-VVNWCGHKYGYQNFEN
+GDKSRNTSPWGILLLGELFQNNHHKFGESPNF-A-KKWFEFDPTYPVMKF
+FNFIGII-KLKKAEVKVVNMKAAA-------------------
+>313606.M23134_06219
+MQQLSKNYLKLQVKKNFIGMI----------------------IFIFLAT
+HWYLSLFSQTFFLHRYAAHKMFTMSNFWEKYFYIFAYITQGSSYMSPYAY
+GAMHRLHHAYADTENDPHSPAYDANPFAMM-WRSKNVYMDIYQKRVDLED
+RFVKD--LPKWHWFDSWGNNWISRVLWGLSYIAF-------YVVF-----
+--AEY-----WW-MYLFLPIHFIMGPF---HGV-IINWIAHKHGYRNFEV
+QDTAHNIMPLDVFMMGEGYHNNHHANGSRANF-G-VKWHEIDPTFVVIKV
+LNALHIV-RLVPEKVTKAQEKPKETVAS---------------
+>983548.Krodi_2702
+-------------------ML----------------------IIFFIVI
+LWYSGLFFQSFFLHRYAAHQTFTMSKTTEKITFILTWLFQGPSYLSAYGY
+GIMHRMHHAYTDTEKDPHSPSYDANLFAMM-WKTKTIYQDINNDRIEVDP
+KFKKN--VPQWKSFDTFASSRLSRLLWVGLYIAF-------FAVF-----
+--ATA-----WW-QWLLLPVAFAMAPI---HGV-IINWFGHILGYTNFKT
+KDTSKNLFRFDFLMMGEAYHNNHHKFAARPNFGG-IHWYEIDVTYVIMKV
+LHRTGVI-KMKPITIDVHSHH----------------------
+>313590.MED134_05839
+-------------------ML----------------------ILLFVIV
+MWYSGLFFQSFFLHRYAAHQTFTMSKTAEKITFVLTWIFQGPSYLSAYGY
+GIMHRMHHAYTDTDKDPHSPSYDENPFAMM-WKTKNIYQDINNDRVEVDA
+KFKKN--VPQWKRFDAFASSRFSRVLWGALYITF-------FAVF-----
+--ATA-----WW-QWLFLPVVLAMAPI---HGV-IINWFGHILGYRNFKT
+KDTSKNLFRFDFLMMGEGYHNNHHKFGSRPNFGG-VRWYEIDVTYLIMRF
+LHRINLI-QMKPIKIDVQRHR----------------------
+>313595.P700755_18927
+--------------------------------------------------
+-----------------------MSKTMERITFVLTWIFQGPSYLSAYGY
+GIMHRMHHAYTDTEKDPHSPSHDANLFAMM-WKTKTIYQDINQQRIKVDQ
+KFTKN--VPQWKEFDLFASSRISRILWVSAYILF-------FSFF-----
+--ATT-----WW-EWLLLPVTLAMAPI---HGV-IINWFGHIFGYVNYKV
+KNTSKNLFPFDFLMMGEGYHNNHHKHSSSPNFG--VKWHEIDMTYLIIRV
+LDTLGFI-KLKPIPVRS---S----------------------
+>313594.PI23P_09755
+-------------------MI----------------------IVIFILV
+LWYGGLFFQSFFLHRYAAHQVFTMSKTMERISFILTWFFQGSSYLSAYGY
+GIMHRMHHAYTDTEKDPHSPSHDPNLFAMM-WKTKTIYQDINDQNIVVDE
+KFTKN--VPQWKSFDAFASSRFSRLLWISFYILF-------FAYF-----
+--TTA-----LW-QWALLPVALLMAPI---HGV-IINWFGHIYGYVNYKM
+TNTSKNLFPFDFLMMGEGYHNNHHKHASSANFG--IKWHEVDVTYVIMKV
+LHFLGCI-QLKSIPAKR--------------------------
+>688270.Celal_3922
+-------------------MA----------------------VIIFVLV
+LWYGGLFFQSFFLHRYAAHQVFTMSKTMERITFILTWIFQGSSYLSAYGY
+GVMHRMHHAYTDTDKDPHSPSHDANLFAMM-WRTKNIYQDINKERIAIDQ
+RFTKN--VPQWKAFDKFASSRISRVLWISMYILF-------FALF-----
+--TTA-----TW-QWALLPITFLMAPI---HGV-IINWFGHIYGYVNYQM
+KNTSKNLFRFDFLMMGEGYHNNHHRHANRANFG--VKWYEIDVTYVIIRL
+LDAFGFI-QLKRIAIKD---K----------------------
+>867900.Celly_2895
+-------------------MA----------------------IVIFVLV
+LWYGGLFFQSFFLHRYAAHQVFTMSKTTERITFVLTWIFQGSSYLSAYGY
+GVMHRMHHAYTDTEKDPHSPAYDDNLFSMM-WRTKTVYQDINKERIAVDK
+RFTKN--VPQWKSFDAFASSRFSRLLWITLYILF-------FVYF-----
+--TTA-----AW-QWALLPITFLMAPI---HGV-IINWFGHIYGYVNFKM
+KNTSKNLFRFDFLMMGEGYHNNHHKYASRANFG--VKWYEVDVTYVIIKI
+LNAFGII-RLKPVAVAQ---K----------------------
+>1046627.BZARG_166
+-------------------MA----------------------VIIFVLV
+LWYGGLFFQSFFLHRYAAHQVFTMSKTMERITFILTWIFQGSSYLSAYGY
+GIMHRMHHAYTDTEQDPHSPSYDANMFAMM-WKTKTIYQDINLERVDVDP
+RFTKN--VPQWKAFDKFAGSRFSRILWITLYTLF-------FVFF-----
+--ATA-----WW-QWLLLPVTFLMAPI---HGV-IINWFGHIYGYVNFKM
+KNTSKNLFRFDFLMMGEGYHNNHHKFASRANFG--VKWYEVDMTYVIIRV
+LNAVGVI-QLKPVAIKK--------------------------
+>216432.CA2559_10163
+-------------------MA----------------------VILFVLV
+LWYGGLFFQSFFLHRYAAHQVFTMSKTMERITFILTWIFQGASYLSAYGY
+GIMHRMHHAYTDTEEDPHSPSHDANIFAMM-WKTKTIYQDINKQRITVEP
+RFTKN--IPQWSSFDMFASSRISRLLWITGYILF-------FAFF-----
+--ATA-----WW-QWLLLPITFLMAPI---HGV-IINWFGHIYGYVNFAM
+KNTSKNLFRFDFLMMGEGYHNNHHKYASRANFG--VKWYEIDVTYLVIRL
+LDALRII-HLKPIPIKK--------------------------
+>156586.BBFL7_00268
+-------------------MT----------------------ILIFVLV
+LWYGGLFFQSFFLHRYAAHQVFTMSKTMERITFILTWIFQGASYLSAYGY
+GIMHRMHHAYTDTEKDPHSPSYDANLFAMM-WKTKTIYQDINKQRIEVDQ
+RFTKD--VPQWNGFDQFASSRFSRLLWITGYVLF-------FALF-----
+--ATA-----WW-QWLLLPLTFLMAPV---HGV-IINWFGHIYGYVNFKM
+KNTSKNLFRFDFLMMGEGYHNNHHKHASRANFG--VKWYEIDMTYVVIKL
+LHTMRII-TLKNT------------------------------
+>531844.FIC_01750
+-------------------MT----------------------IIIFIIV
+LWYSGLFFQTFFLHRYAAHQTYKMSRFGEKLCYFLTWVTQGSNYLSAYGY
+GVMHRMHHAYADTEKDPHSPKYDHNLFTMM-WRTKSIYQQINQQKVKIEE
+KFTKN--VPQWESFDKFASSWGSRIGWAVAYTLF-------FYFF-----
+--ATA-----WW-QWILLPVAYMMAPI---HGV-IINWFGHIYGYVNFKV
+SDTSKNLFRFDWLMMGEAYHNNHHKFGGRANFGG-VRWHEIDVTYQIMIL
+LDKMKLI-KLKPVPAVTREI-----------------------
+>983544.Lacal_2770
+-------------------MT----------------------ILIFIII
+LWYTGLFFQTFFLHRYAAHQTFTMSKITERVCFVLTWVFQGSNYLSAYGY
+GVMHRMHHAYADTENDPHSPKYDPNLFSMM-WRTKNIYQDINKKRIAVAN
+KFTKN--VPQWKRFDQFASSRASRLTWAALYITF-------FALF-----
+--ATA-----WW-QWLLLPVAFFMAPI---HGV-IINWFAHIYGYTNFKV
+KDTSKNLLPFDFLMMGESYHNNHHTHSGRANFG--VKWHEIDFTYCIMVV
+LDKLKII-KLKKAAI----------------------------
+>50743.SCB49_11894
+-------------------MT----------------------ILIFIIV
+LWYGGLFFQTFFLHRYAAHQTYTMSKLTERIVFILTWFFQGSNYLSAYGY
+GVMHRMHHAYADTEKDPHSPKYDLSVFAMM-WRTKTIYTDINKQKIEVEP
+KFTKN--VPQWKSFDAFASSWFSRVAWGVAYFAF-------FLAF-----
+--STA-----WW-QWLFFPVALFMAPI---HGV-IINWYGHIYGYVNFKS
+KDTSKNLFKFDFLMMGEGYHNNHHKHSSRANFGG-VRWHEIDVTYMIMLL
+LNALGII-KLKPNTVKVRREL----------------------
+>504472.Slin_3564
+-------------------MI----------------------IIAFFLA
+HWYLSVLMQTFFLHRYAAHQMFTMSPGWEKFFYVLTFIGQGSSFLSPRAY
+GIMHRLHHAHADTEFDPHSPEYSNNLFDMM-WKTRTFYNDILNNRDTIPA
+KFKKGV--PNWPFMEWFGDRWPVRLAWGTAYTLF-------YIQF-----
+--APS-----PW-YFLLLPVHFLMGPV---HGA-IINWYAHRYGYTNFKL
+NDTAKNLLPFDFLMMGESYHNNHHKYGGRPNF-GGFRWHEFDPAYPLILL
+LNKIGVL-KLRLGRDEAYM------------------------
+>269798.CHU_1136
+-------------------MI----------------------ILLFFVA
+HWYLSLFMQTFFLHRYAAHQMFTMSKGWEKFFYILTWLFQGSSYLSPYAY
+GVMHRLHHTYADTDKDPHSPKYSTGMFDMM-WKTKNIYNDILHGRIELDP
+KYKKNV--PYWGFIEKMGDNWFSRVAWGTAYTLF-------YVYF-----
+--ATH-----WW-MFLLLPIHYLMGPV---HGA-IINWFAHKYGYVNFVV
+NDTAKNLLPVDFLMFGESYHNNHHKLGGRANF-G-VKWHEFDPAYPIILF
+FNAFHII-KLKRNNDLNYM------------------------
+>761193.Runsl_0181
+-------------------MY----------------------ILVFFVA
+HWYLSLLMQTFFLHRYAAHKMFTMSPFWEKFFYTLTFIFQGSSFLSPYAY
+GVMHRLHHAYADTEEDPHSPSFSSSLMDMM-WKTKNYYNNILHREDTIPA
+KFKKDV--PHWAFIERLGDYWFIRIAWGTLYVLF-------YIQF-----
+--ATA-----WW-MFLLLPIHFLMGPV---HGV-IINWYAHKYGYTNFKV
+NDTAKNLLPFDFLMMGESYHNNHHKLGGRANF-G-VKWHEFDPTYPFILF
+LNATGII-KLKRNNDLNYMPQ----------------------
+>388413.ALPR1_11145
+-------------------MI----------------------IIIFFLL
+HWYFSLFCQSFFLHRYAAHQMFVMNKYWERFFYIFTWLWQGSSYLSPRAY
+AILHRMHHAYSDTPKDPHSPHHTENLFTMM-WKTKNIYNEYFSFRLTPEE
+RFSKD--IPDWNRFDKFADTMYIRVAWGLLYVLI-------YVLCISVFE
+LPGTH-----WW-MYFLLPIHFLMGPV---HGA-IVNWSGHKYGYANFDN
+NDKSKNSLLLDVLMLGELFQNNHHKLPNRPNF-A-VKWYEFDPTYPIVKL
+LHATKII-KLRTT------------------------------
+>880070.Cycma_5088
+-------------------MI----------------------LIIFFLL
+HWYFSLFCQSFFLHRYAAHQMFVMNKYWEKFFYIFTWFCQGSSYLSPRAY
+AILHRMHHAYSDTPLDPHSPHHTENLFTMM-WKTKKIYNEHFTFRAKPEE
+RFIKD--VPDWNRFDKFADTMGIRIGWVLVYVLI-------YVLSISVFE
+LAGTH-----WW-MYFLLPIHFMMGPV---HGA-IVNWSGHKYGYANFDN
+NDKSKNSLILDFLMLGELFQNNHHKLPKRVNF-A-VKWYEFDPTYPIVKL
+LHATGII-KLKPTN-----------------------------
+>269798.CHU_1595
+--------------MTGTAWP----------------------IIIFFVA
+HWYLSLFSQTFFLHRYSAHAMFKMNKFWEKFFFIFLYLTQGSSYLVPRAY
+GALHRMHHAYSDTEKDPHSPLYSRNAFVMM-WKTKDIYNAVLRREAQVED
+KFNKN--LPEWAFIDNIGDMWISRIIWGTLYVLF-------YIYF-----
+VPADM-----WY-LYLLLPIHFLMGPV---HGA-IVNWFGHKLGYQNFDN
+KDASRNTLALDVLLGGELFQNNHHMYGSRPNF-A-MKWFEFDPTYPVIKV
+LHYVRII-RLVNPDAKA--------------------------
+>504472.Slin_1354
+-------------------MI----------------------VLAAFIG
+HWYLSLFCQTFFLHRYSAHKMFSMSKFWERFFYALTYVSQGSSYLSPRAY
+AVLHRMHHAFSDTEKDPHSPHHTKNIFTMM-WKTKDIYNAVLHRKQPVER
+QFDRN--YPEWSFIEKVGDSWVSRAGWAVMYSVF-------YIFAFI---
+YLDMH-----WA-FFFLLPVHFVMGPV---HGA-IINWSGHKYGYSNFDN
+QDQSKNSLILDVVMMGELFQNNHHKRPNAANF-G-AKWFEFDPTFPVIGL
+LHKLHIV-RLRPSAEAKKAQYEVGHDRRVEEVQKEV---EA--
+>761193.Runsl_4144
+------------------MYA----------------------VLAAFFG
+HWYLSLFCQTFFLHRYSAHKMFTMNKFWEKFFYALTYVSQGSSYLSPRAY
+AILHRMHHAFSDTDKDPHSPHHTENVFTMM-WKTKDIYNAVLSRKMKVEA
+RFERD--YPYWEKLEKLGDSWISRLGWGILYSAF-------YFFAFM---
+YLDMH-----WA-FFLLLPIHYLMGPV---HGA-IVNWSGHKYGYQNFDN
+KDKSKNSLIFDILMMGELFQNNHHKLPNRVNF-G-TKWFEFDPTYPVIKF
+LSWTRII-TMKESKVGVEVPSSKAEMMQ---------------
+>471854.Dfer_0451
+------------------MYI----------------------VLIVFVV
+HWYLSLFCQTFFLHRYSAHKMFIMSKPWERFFYLLTYVSQGSSYLSPRAY
+AILHRMHHAFSDTDKDPHSPHHTKNVFTMM-WETKNIYNAVLNRKRAIEN
+RFERN--YPEWRLIEKLGDSWISRAGWGILYIVF-------YVLAYI---
+YLDMH-----WA-FFFLLPIHFLMGPI---HGA-IVNWSGHKYGYQNFDN
+DDKSKNSLIFDFLMMGELFQNNHHKRPNSINF-G-SRWFEIDPTYPVIKV
+LNKLKII-EIRKKH-----------------------------
+>714943.Mucpa_3868
+------------------M-Y----------------------ILIFFLA
+HWFLSLFFQTFFLHRYASHKMFTTSRVFERIIYLLDYICLGSSFLNPRAY
+ALMHREHHAYSDTEKDPHSPHFFTDVFQLM-WATVLTYGDHLKRLKEPES
+RFTGN--IPEWPLIDRIGSSIASRIVFGLLYTWY-------YVAF-----
+--ATE-----WW-MYLLLPIHFLMGPI---HGA-IVNWCGHKYGYANFDN
+NDKSKNSTPFDFLMLGELFQNNHHKHPNSANF-A-KRWFEIDPVYPIMKV
+MHWVRLI-KLRKAV-----------------------------
+>485917.Phep_3484
+------------------M-I----------------------ILLFFLL
+HWFLSLFSQTFFLHRYASHKMFKMNTFWEKFFYIITFLSQGSSFLNPRAY
+AILHRMHHAFSDTEKDPHSPHFVKDVWGMM-IQTKNIYLNYSKYNVEPEE
+QFRDK--YPSWPLIDKIGDSWITRIIFISFYIWF-------YVVF-----
+--ATS-----WW-MFLLLPIHFLMGPI---HGA-IVNWCGHKYGYSNHDN
+DDHSKNSLPFDFLMLGELFQNNHHKKPNSPNF-A-SRWFEFDPTYPVMKL
+MHWMRII-KIRKTDH----------------------------
+>391596.PBAL39_23567
+--------------------------------------------------
+--------------------MFKMNFFWERFFYLITFLSQGSSFLNPRAY
+AILHRMHHAFSDTEKDPHSPHFVKDVWGMM-IQTKNIYLNYAKYNVEPEE
+QFRDN--YPSWPIIDKIGDSWITRIVFISFYVWF-------YVTF-----
+--ATA-----WW-MFFLLPIHFLMGPL---HGA-IVNWCGHKYGYSNHDN
+NDHSRNSLPLDFLMLGELFQNNHHKKPNSPNF-A-SRWFEFDPTYPIMKV
+LHWMRII-KIRKV------------------------------
+>643867.Ftrac_2304
+MAV--AVKENLKIRKKGTWKKEISFAIVHLLPLGAIWTGATWFDWTVCAF
+LYVWRMFWVTGGYHRYFAHRSYNTSRWFQ---FLIAFFAQTSAQKGALWW
+ASHHRHHHRNSDTLKDPHSMLHFGFWYSHVGWII---GSDFKKTDFKVIS
+DYSKY---PELRWLNK--------NYLVPPVILALTVMALGGLVN-----
+--GGTILAMFTTAGFSTLFIGFFLSTIILYHATFSINSIMHKFGNQRYET
+GDESRNSVWLALLTLGEGWHNNHHYYETSARQ-G-FFWWEVDLTYYGLKF
+MSMLGLIWDLKPVPKHIKKSRNKQ--EAKELKEQFKKQVA---
+>485918.Cpin_3312
+------MNSEKQLRKGPNWWRQFDFLGLHLLPILAFWTHVTTFDWILCAV
+LYVVRMFFVTGGYHRYFSHRTFKTSRFFQ---FILAGGAQSSLQKGVLWW
+GANHRVHHKHSDTPEDPHSANIYGFWYAHMGWIM---GPEFKPTRYELIK
+DFK-Q---PELYWLNK--------YHWVPGVILGVACYFIGNKVN-----
+--GEGWFDWH--AGLSTLLVGFVLSTIFLYHGTFTINSLMHKWGKPRYKT
+GDFSKNSAILALVTLGEGWHNNHHYYQSATRQ-G-FFWWEFDITYYILRT
+LGVFGIVWDIRGVPEKVKSSNLLTDEAREEVKAANRRLVEENR