# HG changeset patch
# User padge
# Date 1697734200 0
# Node ID 4769baf47b8d4502ca539eaf2098e822a9ebc976
# Parent  0d53577b962f3bef63d603f13ef86eec7ada73d7
planemo upload for repository https://github.com/inab/trimal commit 3b2eb8e972bed82a1cd7c1e327b81ecfd994fb3d

diff -r 0d53577b962f -r 4769baf47b8d README.rst
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/README.rst	Thu Oct 19 16:50:00 2023 +0000
@@ -0,0 +1,4 @@
+trimAl
+======
+
+[trimAl](https://github.com/inab/trimal), a tool for automated alignment trimming in large-scale phylogenetic analyses.
diff -r 0d53577b962f -r 4769baf47b8d trimal.xml
--- a/trimal.xml	Mon Apr 11 13:07:11 2022 +0000
+++ b/trimal.xml	Thu Oct 19 16:50:00 2023 +0000
@@ -23,6 +23,7 @@
                 <option value="-gappyout">gappyout. Only uses information based on gaps' distribution. (see User Guide)</option>
                 <option value="-strict">strict. (see User Guide)</option>
                 <option value="-strictplus">strictplus. (see User Guide)</option>
+                <option value="-automated1">automated</option>
                 <option value="custom">Custom mode</option>
             </param>
             <when value="custom">
@@ -92,6 +93,7 @@
     -gappyout                Use automatic selection on "gappyout" mode. This method only uses information based on gaps' distribution. (see User Guide).
     -strict                  Use automatic selection on "strict" mode. (see User Guide).
     -strictplus              Use automatic selection on "strictplus" mode. (see User Guide).
+    -automated1              Use an heuristic method to decide which is the best automated method for a given MSA.
     trimAl v1.4.rev15 build[2013-12-17]. 2009-2013. Salvador Capella-Gutierrez and Toni Gabaldón.
 
 Custom mode parameters