Mercurial > repos > padge > trimal
changeset 3:4769baf47b8d draft default tip
planemo upload for repository https://github.com/inab/trimal commit 3b2eb8e972bed82a1cd7c1e327b81ecfd994fb3d
| author | padge |
|---|---|
| date | Thu, 19 Oct 2023 16:50:00 +0000 |
| parents | 0d53577b962f |
| children | |
| files | README.rst trimal.xml |
| diffstat | 2 files changed, 6 insertions(+), 0 deletions(-) [+] |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/README.rst Thu Oct 19 16:50:00 2023 +0000 @@ -0,0 +1,4 @@ +trimAl +====== + +[trimAl](https://github.com/inab/trimal), a tool for automated alignment trimming in large-scale phylogenetic analyses.
--- a/trimal.xml Mon Apr 11 13:07:11 2022 +0000 +++ b/trimal.xml Thu Oct 19 16:50:00 2023 +0000 @@ -23,6 +23,7 @@ <option value="-gappyout">gappyout. Only uses information based on gaps' distribution. (see User Guide)</option> <option value="-strict">strict. (see User Guide)</option> <option value="-strictplus">strictplus. (see User Guide)</option> + <option value="-automated1">automated</option> <option value="custom">Custom mode</option> </param> <when value="custom"> @@ -92,6 +93,7 @@ -gappyout Use automatic selection on "gappyout" mode. This method only uses information based on gaps' distribution. (see User Guide). -strict Use automatic selection on "strict" mode. (see User Guide). -strictplus Use automatic selection on "strictplus" mode. (see User Guide). + -automated1 Use an heuristic method to decide which is the best automated method for a given MSA. trimAl v1.4.rev15 build[2013-12-17]. 2009-2013. Salvador Capella-Gutierrez and Toni Gabaldón. Custom mode parameters