annotate RemovingNonAsciicharsfromtextfile/RemovingNonAsciicharsfromtextfile.xml @ 0:33f04fc1f109 draft default tip

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<tool id="RemovingNonAsciicharsfromtextfile" name="RemovingNonAsciicharsfromtextfile" version="0.01">
<description>Removing Non-Ascii chars from text file</description>

<command interpreter="python">

        RemovingNonAsciicharsfromtextfile.py --script_path "$runMe" --interpreter "bash" 
            --tool_name "RemovingNonAsciicharsfromtextfile" --input_tab "$input1"   --output_dir "./" --output_tab "$tab_file" 
</command>
<inputs>
<param name="input1"  type="data" format="interval,tabular,txt" label="Select a suitable input file from your history"/> 
<param name="job_name" type="text" label="Supply a name for the outputs to remind you what they contain" value="RemovingNonAsciicharsfromtextfile"/> 

</inputs>
<outputs>
 <data format="txt" name="tab_file" label="${job_name}"/>

</outputs>
<configfiles>
<configfile name="runMe">
#!/bin/bash
INF=\$1
OUTF=\$2
perl -pe's/[[:^ascii:]]//g' &lt; \$INF &gt; \$OUTF
</configfile>
</configfiles>


        <tests>
        <test>
        <param name="input1" value="RemovingNonAsciicharsfromtextfile_test1_input.xls" ftype="interval,tabular,txt"/>
        <param name="job_name" value="test1"/>
        <param name="runMe" value="$runMe"/>
        <output name="tab_file" file="RemovingNonAsciicharsfromtextfile_test1_output.xls" ftype="txt"/>
        </test>
        </tests>
        

<help>


**What it Does**

Removing Non-Ascii chars from text file

**Script**
Pressing execute will run the following code over your input file and generate some outputs in your history::


 #!/bin/bash
 INF=\$1
 OUTF=\$2
 perl -pe's/[[:^ascii:]]//g' &lt; \$INF &gt; \$OUTF

**Attribution**
This Galaxy tool was created by [e-mail] at 26/04/2018 16:33:35
using the Galaxy Tool Factory.

See https://bitbucket.org/fubar/galaxytoolfactory for details of that project
Please cite: Creating re-usable tools from scripts: The Galaxy Tool Factory. Ross Lazarus; Antony Kaspi; Mark Ziemann; The Galaxy Team. 
Bioinformatics 2012; doi: 10.1093/bioinformatics/bts573


</help>
<citations>
    
    <citation type="doi">10.1093/bioinformatics/bts573</citation>
</citations>
</tool>