comparison tool_dependencies.xml @ 45:6b0981ab063e draft default tip

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author pavlo-lutsik
date Thu, 14 Aug 2014 14:56:18 -0400
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44:51c4548d56ed 45:6b0981ab063e
1 <?xml version="1.0"?>
2 <tool_dependency>
3 <set_environment version="1.0">
4 <environment_variable name="R_SCRIPTS_PATH" action="set_to">$REPOSITORY_INSTALL_DIR</environment_variable>
5 </set_environment>
6 <package name="R" version="3.1.0">
7 <install version="1.0">
8 <actions>
9 <action type="download_by_url">http://CRAN.R-project.org/src/base/R-3/R-3.1.0.tar.gz</action>
10 <action type="shell_command">./configure --prefix=$INSTALL_DIR --with-x=no</action>
11 <action type="shell_command">make</action>
12 <action type="shell_command">make install</action>
13 <action type="set_environment">
14 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
15 </action>
16 <action type="shell_command">$INSTALL_DIR/bin/R --no-save &lt;&lt;&lt; "install.packages('getopt', repos='http://cran.r-project.org'); source('http://rnbeads.mpi-inf.mpg.de/install.R')"</action>
17 </actions>
18 </install>
19 <readme>
20 You need a FORTRAN compiler or perhaps f2c in addition to a C compiler to build R.
21 </readme>
22 </package>
23 </tool_dependency>