Mercurial > repos > pedro_araujo > phage_host_prediction
comparison README.rst @ 5:1dbf350629bf draft
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author | pedro_araujo |
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date | Fri, 29 Jan 2021 16:07:29 +0000 |
parents | 1389cfeefb76 |
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2 PhageHostPrediction | 2 **PhageHostPrediction** |
3 ***** | |
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5 Predict interactions between phages and bacterial strains. | 4 Predict interactions between phages and bacterial strains. |
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7 PhageHostPrediction is a python script that predicts phage-host interactions for *E. coli*, *K. pneumoniae* and *A. baumannii* phages, using supervised machine learning models. The models were built from a dataset containing 252 features and 23 987 entries with balanced outputs of 'Yes' and 'No'. The positive cases of interaction predicted are described in the file "NCBI_Phage_Bacteria_Data.csv", contained within this tool, while the negative were randomly assigned by pairing phages with bacteria of different species. | 6 PhageHostPrediction is a python script that predicts phage-host interactions for *E. coli*, *K. pneumoniae* and *A. baumannii* phages, using supervised machine learning models. The models were built from a dataset containing 252 features and 23 987 entries with balanced outputs of 'Yes' and 'No'. The positive cases of interaction predicted are described in the file "NCBI_Phage_Bacteria_Data.csv", contained within this tool, while the negative were randomly assigned by pairing phages with bacteria of different species. |
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