Mercurial > repos > pedro_araujo > phage_host_prediction

comparison README.rst @ 2:8674f554d76b draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author pedro_araujo
date Fri, 29 Jan 2021 16:01:12 +0000
parents e4b3fc88efe0
children b5ef05b57eaa
comparison
equal deleted inserted replaced
1:f8dee15a72a4 2:8674f554d76b
1 1
2 PhageHostPrediction 2 PhageHostPrediction
3 ===============
4 3
5 Predict interactions between phages and bacterial strains. 4 Predict interactions between phages and bacterial strains.
6 5
7 PhageHostPrediction is a python script that predicts phage-host interactions for *E. coli*, *K. pneumoniae* and *A. baumannii* phages, using supervised machine learning models. The models were built from a dataset containing 252 features and 23 987 entries with balanced outputs of 'Yes' and 'No'. The positive cases of interaction predicted are described in the file "NCBI_Phage_Bacteria_Data.csv", contained within this tool, while the negative were randomly assigned by pairing phages with bacteria of different species. 6 PhageHostPrediction is a python script that predicts phage-host interactions for *E. coli*, *K. pneumoniae* and *A. baumannii* phages, using supervised machine learning models. The models were built from a dataset containing 252 features and 23 987 entries with balanced outputs of 'Yes' and 'No'. The positive cases of interaction predicted are described in the file "NCBI_Phage_Bacteria_Data.csv", contained within this tool, while the negative were randomly assigned by pairing phages with bacteria of different species.
8 7