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view macros.xml @ 1:57f1260ca94e draft

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"planemo upload commit fec9dc76b3dd17b14b02c2f04be9d30f71eba1ae"
author watsocam
date Fri, 11 Mar 2022 23:40:51 +0000
parents 99308601eaa6
children 224e0cf4aaeb
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<?xml version="1.0"?>
<macros>
    <xml name="requirements">
        <requirements>
            <container type="docker">labsyspharm/unetcoreograph:@VERSION@</container>
            <requirement type="package" version="3.6">python</requirement>
            <requirement type="package" version="1.15.1">tensorflow-estimator</requirement>
            <requirement type="package" version="1.15">tensorflow</requirement>
            <requirement type="package">cython</requirement>
            <requirement type="package" version="0.14.2">scikit-image</requirement>
            <requirement type="package">matplotlib</requirement>
            <requirement type="package" version="2020.2.16">tifffile</requirement>
            <requirement type="package" version="1.1.0">scipy</requirement>
            <requirement type="package">opencv</requirement>
            <requirement type="package" version="0.8.1">pytiff</requirement>
        </requirements>
    </xml>

    <xml name="version_cmd">
        <version_command>echo @VERSION@</version_command>
    </xml>
    <xml name="citations">
        <citations>
        </citations>
    </xml>

    <token name="@VERSION@">2.2.8</token>
    <token name="@CMD_BEGIN@"><![CDATA[
    UNET_PATH="";
    if [ -f "/app/UNetCoreograph.py" ]; then
        export UNET_PATH="/app/UNetCoreograph.py";
    else
        export UNET_PATH="${__tool_directory__}/UNetCoreograph.py";
    fi;
    ]]></token>
</macros>