annotate macros.xml @ 2:46b897eb2c8e draft

"planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 150f21e52974f99ec39bf92d9e7e611861860d0f"

<?xml version="1.0"?>
<macros>
    <xml name="requirements">
        <requirements>
            <container type="docker">labsyspharm/quantification:@VERSION@</container>
            <requirement type="package" version="3.9">python</requirement>
            <requirement type="package" version="0.18.0">scikit-image</requirement>
            <requirement type="package">h5py</requirement>
            <requirement type="package">pandas</requirement>
            <requirement type="package">numpy</requirement>
            <requirement type="package">pathlib</requirement>
        </requirements>
    </xml>

    <xml name="version_cmd">
        <version_command>echo @VERSION@</version_command>
    </xml>
    <xml name="citations">
        <citations>
        </citations>
    </xml>

    <token name="@VERSION@">1.5.1</token>
    <token name="@CMD_BEGIN@"><![CDATA[
    QUANT_PATH="";
    if [ -f "/app/CommandSingleCellExtraction.py" ]; then
        export QUANT_PATH="/app/CommandSingleCellExtraction.py";
    else
        export QUANT_PATH="${__tool_directory__}/CommandSingleCellExtraction.py";
    fi;
    ]]></token>
</macros>