Mercurial > repos > perssond > quantification
comparison macros.xml @ 4:261464223fa3 draft
planemo upload for repository https://github.com/goeckslab/tools-mti commit ed91d9e0dd189986b5c31fe23f5f78bd8765d862
| author | goeckslab |
|---|---|
| date | Tue, 06 Sep 2022 23:18:12 +0000 |
| parents | aba3655fdef0 |
| children | 3a916c4e9f5f |
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| 3:c09e444635d9 | 4:261464223fa3 |
|---|---|
| 1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
| 2 <macros> | 2 <macros> |
| 3 <xml name="requirements"> | 3 <xml name="requirements"> |
| 4 <requirements> | 4 <requirements> |
| 5 <container type="docker">labsyspharm/quantification:@VERSION@</container> | 5 <!-- |
| 6 <requirement type="package" version="3.9">python</requirement> | 6 <requirement type="package" version="3.9">python</requirement> |
| 7 <requirement type="package" version="0.18.0">scikit-image</requirement> | 7 <requirement type="package" version="0.18.0">scikit-image</requirement> |
| 8 <requirement type="package">h5py</requirement> | 8 <requirement type="package">h5py</requirement> |
| 9 <requirement type="package">pandas</requirement> | 9 <requirement type="package">pandas</requirement> |
| 10 <requirement type="package">numpy</requirement> | 10 <requirement type="package">numpy</requirement> |
| 11 <requirement type="package">pathlib</requirement> | 11 <requirement type="package">pathlib</requirement> |
| 12 --> | |
| 13 <container type="docker">labsyspharm/quantification:@TOOL_VERSION@</container> | |
| 12 </requirements> | 14 </requirements> |
| 13 </xml> | 15 </xml> |
| 14 | 16 |
| 15 <xml name="version_cmd"> | 17 <xml name="version_cmd"> |
| 16 <version_command>echo @VERSION@</version_command> | 18 <version_command>echo @TOOL_VERSION@</version_command> |
| 17 </xml> | 19 </xml> |
| 18 <xml name="citations"> | 20 <xml name="citations"> |
| 19 <citations> | 21 <citations> |
| 20 </citations> | 22 </citations> |
| 21 </xml> | 23 </xml> |
| 22 | 24 |
| 23 <token name="@VERSION@">1.5.1</token> | 25 <token name="@TOOL_VERSION@">1.5.1</token> |
| 26 <token name="@VERSION_SUFFIX@">0</token> | |
| 24 <token name="@CMD_BEGIN@"><![CDATA[ | 27 <token name="@CMD_BEGIN@"><![CDATA[ |
| 25 QUANT_PATH=""; | 28 QUANT_PATH='' && |
| 26 if [ -f "/app/CommandSingleCellExtraction.py" ]; then | 29 if [ -f '/app/CommandSingleCellExtraction.py' ]; then |
| 27 export QUANT_PATH="/app/CommandSingleCellExtraction.py"; | 30 export QUANT_PATH='python /app/CommandSingleCellExtraction.py'; |
| 28 else | 31 else |
| 29 export QUANT_PATH="${__tool_directory__}/CommandSingleCellExtraction.py"; | 32 export QUANT_PATH='CommandSingleCellExtraction.py'; |
| 30 fi; | 33 fi && |
| 34 \$QUANT_PATH | |
| 31 ]]></token> | 35 ]]></token> |
| 32 </macros> | 36 </macros> |