Mercurial > repos > perssond > quantification
comparison quantification.xml @ 5:3a916c4e9f5f draft
planemo upload for repository https://github.com/goeckslab/tools-mti commit 0762a583dd9d7333f9b039bc06003caaff0f2103
| author | goeckslab |
|---|---|
| date | Wed, 28 Dec 2022 21:19:44 +0000 |
| parents | 261464223fa3 |
| children | e11d5fafd0cc |
comparison
equal
deleted
inserted
replaced
| 4:261464223fa3 | 5:3a916c4e9f5f |
|---|---|
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements"/> | 6 <expand macro="requirements"/> |
| 7 <expand macro="version_cmd"/> | 7 <expand macro="version_cmd"/> |
| 8 | 8 |
| 9 <command detect_errors="exit_code"><![CDATA[ | 9 <command detect_errors="aggressive"><![CDATA[ |
| 10 ln -s '$image' 'input.ome.tiff' && | 10 ln -s '$image' 'input.ome.tiff' && |
| 11 ln -s '$primary_mask' 'primary_mask.tiff' && | 11 ln -s '$primary_mask' 'primary_mask.tiff' && |
| 12 #if $supp_mask | 12 #if $supp_mask |
| 13 ln -s '$supp_mask' 'supp_mask.tiff' && | 13 ln -s '$supp_mask' 'supp_mask.tiff' && |
| 14 #end if | 14 #end if |
| 62 <param name="primary_mask" value="mask.tiff" /> | 62 <param name="primary_mask" value="mask.tiff" /> |
| 63 <param name="supp_mask" value="supp_mask.tiff" /> | 63 <param name="supp_mask" value="supp_mask.tiff" /> |
| 64 <param name="channel_names" value="channels.csv" /> | 64 <param name="channel_names" value="channels.csv" /> |
| 65 <output name="cellmask" ftype="csv"> | 65 <output name="cellmask" ftype="csv"> |
| 66 <assert_contents> | 66 <assert_contents> |
| 67 <has_n_columns n="11" sep="," delta="1" /> | 67 <has_n_lines n="264" delta="1" /> |
| 68 </assert_contents> | 68 </assert_contents> |
| 69 </output> | 69 </output> |
| 70 <output name="suppmask" ftype="csv"> | 70 <output name="suppmask" ftype="csv"> |
| 71 <assert_contents> | 71 <assert_contents> |
| 72 <has_n_columns n="11" sep="," delta="1" /> | 72 <has_n_lines n="264" delta="1" /> |
| 73 </assert_contents> | 73 </assert_contents> |
| 74 </output> | 74 </output> |
| 75 </test> | 75 </test> |
| 76 </tests> | 76 </tests> |
| 77 <help><![CDATA[ | 77 <help><![CDATA[ |