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comparison macros.xml @ 1:aba3655fdef0 draft

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"planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
author watsocam
date Fri, 11 Mar 2022 23:35:52 +0000
parents 928db0f952e3
children 261464223fa3
comparison
equal deleted inserted replaced
0:928db0f952e3 1:aba3655fdef0
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <macros> 2 <macros>
3 <xml name="requirements"> 3 <xml name="requirements">
4 <requirements> 4 <requirements>
5 <requirement type="package" version="3.6.10">python</requirement> 5 <container type="docker">labsyspharm/quantification:@VERSION@</container>
6 <requirement type="package" version="0.17.2">scikit-image</requirement> 6 <requirement type="package" version="3.9">python</requirement>
7 <requirement type="package" version="2.10.0">h5py</requirement> 7 <requirement type="package" version="0.18.0">scikit-image</requirement>
8 <requirement type="package" version="1.0.4">pandas</requirement> 8 <requirement type="package">h5py</requirement>
9 <requirement type="package" version="1.18.5">numpy</requirement> 9 <requirement type="package">pandas</requirement>
10 <requirement type="package" version="1.0.1">pathlib</requirement> 10 <requirement type="package">numpy</requirement>
11 <requirement type="package">pathlib</requirement>
11 </requirements> 12 </requirements>
12 </xml> 13 </xml>
13 14
14 <xml name="version_cmd"> 15 <xml name="version_cmd">
15 <version_command>echo @VERSION@</version_command> 16 <version_command>echo @VERSION@</version_command>
17 <xml name="citations"> 18 <xml name="citations">
18 <citations> 19 <citations>
19 </citations> 20 </citations>
20 </xml> 21 </xml>
21 22
22 <token name="@VERSION@">1.3.1</token> 23 <token name="@VERSION@">1.5.1</token>
23 <token name="@CMD_BEGIN@">python ${__tool_directory__}/CommandSingleCellExtraction.py</token> 24 <token name="@CMD_BEGIN@"><![CDATA[
25 QUANT_PATH="";
26 if [ -f "/app/CommandSingleCellExtraction.py" ]; then
27 export QUANT_PATH="/app/CommandSingleCellExtraction.py";
28 else
29 export QUANT_PATH="${__tool_directory__}/CommandSingleCellExtraction.py";
30 fi;
31 ]]></token>
24 </macros> 32 </macros>