Mercurial > repos > perssond > quantification
comparison macros.xml @ 1:aba3655fdef0 draft
"planemo upload for repository https://github.com/ohsu-comp-bio/quantification commit 897a7dc7cb43e45d6f0fdfe2b2970e59f20f8853"
author | watsocam |
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date | Fri, 11 Mar 2022 23:35:52 +0000 |
parents | 928db0f952e3 |
children | 261464223fa3 |
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0:928db0f952e3 | 1:aba3655fdef0 |
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1 <?xml version="1.0"?> | 1 <?xml version="1.0"?> |
2 <macros> | 2 <macros> |
3 <xml name="requirements"> | 3 <xml name="requirements"> |
4 <requirements> | 4 <requirements> |
5 <requirement type="package" version="3.6.10">python</requirement> | 5 <container type="docker">labsyspharm/quantification:@VERSION@</container> |
6 <requirement type="package" version="0.17.2">scikit-image</requirement> | 6 <requirement type="package" version="3.9">python</requirement> |
7 <requirement type="package" version="2.10.0">h5py</requirement> | 7 <requirement type="package" version="0.18.0">scikit-image</requirement> |
8 <requirement type="package" version="1.0.4">pandas</requirement> | 8 <requirement type="package">h5py</requirement> |
9 <requirement type="package" version="1.18.5">numpy</requirement> | 9 <requirement type="package">pandas</requirement> |
10 <requirement type="package" version="1.0.1">pathlib</requirement> | 10 <requirement type="package">numpy</requirement> |
11 <requirement type="package">pathlib</requirement> | |
11 </requirements> | 12 </requirements> |
12 </xml> | 13 </xml> |
13 | 14 |
14 <xml name="version_cmd"> | 15 <xml name="version_cmd"> |
15 <version_command>echo @VERSION@</version_command> | 16 <version_command>echo @VERSION@</version_command> |
17 <xml name="citations"> | 18 <xml name="citations"> |
18 <citations> | 19 <citations> |
19 </citations> | 20 </citations> |
20 </xml> | 21 </xml> |
21 | 22 |
22 <token name="@VERSION@">1.3.1</token> | 23 <token name="@VERSION@">1.5.1</token> |
23 <token name="@CMD_BEGIN@">python ${__tool_directory__}/CommandSingleCellExtraction.py</token> | 24 <token name="@CMD_BEGIN@"><![CDATA[ |
25 QUANT_PATH=""; | |
26 if [ -f "/app/CommandSingleCellExtraction.py" ]; then | |
27 export QUANT_PATH="/app/CommandSingleCellExtraction.py"; | |
28 else | |
29 export QUANT_PATH="${__tool_directory__}/CommandSingleCellExtraction.py"; | |
30 fi; | |
31 ]]></token> | |
24 </macros> | 32 </macros> |