Mercurial > repos > perssond > quantification
changeset 6:e11d5fafd0cc draft default tip
planemo upload for repository https://github.com/goeckslab/tools-mti/tree/main/tools/quantification commit 4a521310a7989b781380c20e1aab3ac13ca86dff
| author | goeckslab |
|---|---|
| date | Tue, 02 Jul 2024 17:48:30 +0000 |
| parents | 3a916c4e9f5f |
| children | |
| files | macros.xml quantification.xml |
| diffstat | 2 files changed, 7 insertions(+), 14 deletions(-) [+] |
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--- a/macros.xml Wed Dec 28 21:19:44 2022 +0000 +++ b/macros.xml Tue Jul 02 17:48:30 2024 +0000 @@ -3,8 +3,8 @@ <xml name="requirements"> <requirements> <!-- - <requirement type="package" version="3.9">python</requirement> - <requirement type="package" version="0.18.0">scikit-image</requirement> + <requirement type="package" version="3.11">python</requirement> + <requirement type="package" version="0.23.2">scikit-image</requirement> <requirement type="package">h5py</requirement> <requirement type="package">pandas</requirement> <requirement type="package">numpy</requirement> @@ -19,18 +19,11 @@ </xml> <xml name="citations"> <citations> + <citation type="doi">10.1038/s41592-021-01308-y</citation> </citations> </xml> - <token name="@TOOL_VERSION@">1.5.3</token> - <token name="@VERSION_SUFFIX@">1</token> - <token name="@CMD_BEGIN@"><![CDATA[ - QUANT_PATH='' && - if [ -f '/app/CommandSingleCellExtraction.py' ]; then - export QUANT_PATH='python /app/CommandSingleCellExtraction.py'; - else - export QUANT_PATH='CommandSingleCellExtraction.py'; - fi && - \$QUANT_PATH - ]]></token> + <token name="@TOOL_VERSION@">1.6.0</token> + <token name="@VERSION_SUFFIX@">0</token> + <token name="@CMD_BEGIN@">mcquant</token> </macros>
--- a/quantification.xml Wed Dec 28 21:19:44 2022 +0000 +++ b/quantification.xml Tue Jul 02 17:48:30 2024 +0000 @@ -57,7 +57,7 @@ </data> </outputs> <tests> - <test> + <test expect_num_outputs="2"> <param name="image" value="test.tiff" /> <param name="primary_mask" value="mask.tiff" /> <param name="supp_mask" value="supp_mask.tiff" />