Mercurial > repos > peterjc > align_back_trans
diff tools/align_back_trans/align_back_trans.xml @ 6:b27388e5a0bb draft
v0.0.10 removed unused reference to muscle format
author | peterjc |
---|---|
date | Mon, 21 Aug 2017 06:26:14 -0400 |
parents | 2c32e8a8990f |
children | 883842b81796 |
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--- a/tools/align_back_trans/align_back_trans.xml Thu May 11 06:13:04 2017 -0400 +++ b/tools/align_back_trans/align_back_trans.xml Mon Aug 21 06:26:14 2017 -0400 @@ -1,16 +1,16 @@ -<tool id="align_back_trans" name="Thread nucleotides onto a protein alignment (back-translation)" version="0.0.9"> +<tool id="align_back_trans" name="Thread nucleotides onto a protein alignment (back-translation)" version="0.0.10"> <description>Gives a codon aware alignment</description> <requirements> <requirement type="package" version="1.67">biopython</requirement> </requirements> <version_command> python $__tool_directory__/align_back_trans.py --version -</version_command> + </version_command> <command detect_errors="aggressive"> python $__tool_directory__/align_back_trans.py $prot_align.ext '$prot_align' '$nuc_file' '$out_nuc_align' '$table' </command> <inputs> - <param name="prot_align" type="data" format="fasta,muscle,clustal" label="Aligned protein file" help="Mutliple sequence file in FASTA, ClustalW or PHYLIP format." /> + <param name="prot_align" type="data" format="fasta,clustal" label="Aligned protein file" help="Mutliple sequence file in FASTA, ClustalW or PHYLIP format." /> <param name="table" type="select" label="Genetic code" help="Tables from the NCBI, these determine the start and stop codons"> <option value="1">1. Standard</option> <option value="2">2. Vertebrate Mitochondrial</option>