Mercurial > repos > peterjc > blast2go
annotate tool-data/blast2go.loc.sample @ 10:8664c4c94764 draft default tip
v0.0.11 - Assorted packaging updates (overdue upload)
author | peterjc |
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date | Tue, 06 Dec 2022 16:29:50 +0000 |
parents | 872cf247c899 |
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e88a3246520e
Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
parents:
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1 # This is a three column tab separated file to define the properties |
e88a3246520e
Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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2 # file (settings) to be offered for Blast2GO for Pipelines (b2g4pipe). |
e88a3246520e
Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
parents:
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3 # |
e88a3246520e
Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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4 # Column 1 - ID, string that Galaxy will save in its database |
e88a3246520e
Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
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5 # Column 2 - Human readable name, Galaxy will show this in the UI |
e88a3246520e
Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
parents:
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6 # Column 3 - Filename, Galaxy will use this when calling the tool |
e88a3246520e
Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
parents:
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7 # |
e88a3246520e
Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
parents:
diff
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8 # Probably the most important setting in the properties file is the |
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872cf247c899
Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents:
5
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9 # Blast2GO database to use. Currently b2g4pipe v2.5 ships with an |
872cf247c899
Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents:
5
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10 # old configuration so consult http://www.blast2go.com for the latest |
872cf247c899
Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents:
5
diff
changeset
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11 # public database they host in Spain (or find this by running the GUI |
872cf247c899
Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents:
5
diff
changeset
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12 # version of Blast2GO via Java Web Start under the menu entry "Tools", |
872cf247c899
Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents:
5
diff
changeset
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13 # "General Settings", "DataAccess setting"). We also strongly recommend |
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e88a3246520e
Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
parents:
diff
changeset
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14 # configuring a local Blast2GO database. |
e88a3246520e
Uploaded v0.0.3 which adds tool-data/blast2go.loc.sample example settings file
peterjc
parents:
diff
changeset
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15 # |
6
872cf247c899
Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents:
5
diff
changeset
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16 # The property filenames can be fully qualified paths like |
5
e4419efbefad
Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents:
3
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17 # /opt/b2g4pipe/Spain_2012_August.properties or provided they are |
e4419efbefad
Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents:
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18 # in the same folder as the Blast2GO JAR file, just the filename |
e4419efbefad
Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents:
3
diff
changeset
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19 # like Spain_2012_August.properties instead. This is intended to |
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872cf247c899
Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents:
5
diff
changeset
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20 # make migrating between future versions of Blast2GO easier (as the |
5
e4419efbefad
Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents:
3
diff
changeset
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21 # property files change between versions), and simpler overall. |
e4419efbefad
Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents:
3
diff
changeset
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22 # |
6
872cf247c899
Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents:
5
diff
changeset
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23 #Local_2011_May Local database (May 2011) Local_2011_May.properties |
872cf247c899
Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents:
5
diff
changeset
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24 #Spain_2010_May Database in Spain (May 2010) Spain_2010_May.properties |
872cf247c899
Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents:
5
diff
changeset
|
25 Spain_2012_August Database in Spain (August 2012) Spain_2012_August.properties |
5
e4419efbefad
Uploaded v0.0.6 of wrapper, which now supports b2g4pipe v2.5 (and no longer works with b2g4pipe v2.3.5). See manual install instructions!
peterjc
parents:
3
diff
changeset
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26 Spain_2011_June Database in Spain (June 2011) Spain_2011_June.properties |
6
872cf247c899
Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
peterjc
parents:
5
diff
changeset
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27 #default Default settings b2gPipe.properties |