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comparison test-data/blastp_sample.xml @ 6:872cf247c899 draft

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Uploaded v0.0.8, auto-installation, RST README, MIT licence, citation information, development moved to GitHub, split out XML formatter into standalone script
author peterjc
date Mon, 23 Sep 2013 05:50:58 -0400
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5:e4419efbefad 6:872cf247c899
1 <?xml version="1.0"?>
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "NCBI_BlastOutput.dtd">
3 <BlastOutput>
4 <BlastOutput_program>blastp</BlastOutput_program>
5 <BlastOutput_version>BLASTP 2.2.24+</BlastOutput_version>
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
7 <BlastOutput_db>nr</BlastOutput_db>
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
9 <BlastOutput_query-def>Sample</BlastOutput_query-def>
10 <BlastOutput_query-len>516</BlastOutput_query-len>
11 <BlastOutput_param>
12 <Parameters>
13 <Parameters_matrix>BLOSUM62</Parameters_matrix>
14 <Parameters_expect>1e-30</Parameters_expect>
15 <Parameters_gap-open>11</Parameters_gap-open>
16 <Parameters_gap-extend>1</Parameters_gap-extend>
17 <Parameters_filter>F</Parameters_filter>
18 </Parameters>
19 </BlastOutput_param>
20 <BlastOutput_iterations>
21 <Iteration>
22 <Iteration_iter-num>1</Iteration_iter-num>
23 <Iteration_query-ID>Query_1</Iteration_query-ID>
24 <Iteration_query-def>Sample</Iteration_query-def>
25 <Iteration_query-len>516</Iteration_query-len>
26 <Iteration_hits>
27 <Hit>
28 <Hit_num>1</Hit_num>
29 <Hit_id>gi|119953746|ref|YP_950551.1|</Hit_id>
30 <Hit_def>tail tape measure protein [Streptococcus phage SMP] &gt;gi|118430558|gb|ABK91882.1| tail tape measure protein [Streptococcus suis phage SMP]</Hit_def>
31 <Hit_accession>YP_950551</Hit_accession>
32 <Hit_len>659</Hit_len>
33 <Hit_hsps>
34 <Hsp>
35 <Hsp_num>1</Hsp_num>
36 <Hsp_bit-score>949.117592429394</Hsp_bit-score>
37 <Hsp_score>2452</Hsp_score>
38 <Hsp_evalue>0</Hsp_evalue>
39 <Hsp_query-from>1</Hsp_query-from>
40 <Hsp_query-to>516</Hsp_query-to>
41 <Hsp_hit-from>27</Hsp_hit-from>
42 <Hsp_hit-to>542</Hsp_hit-to>
43 <Hsp_query-frame>0</Hsp_query-frame>
44 <Hsp_hit-frame>0</Hsp_hit-frame>
45 <Hsp_identity>500</Hsp_identity>
46 <Hsp_positive>500</Hsp_positive>
47 <Hsp_gaps>0</Hsp_gaps>
48 <Hsp_align-len>516</Hsp_align-len>
49 <Hsp_qseq>FHLLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_qseq>
50 <Hsp_hseq>FHLLNSGGSALSVMFAKLVGIIAGISAPIWAVIGVIAALVAGFVLLYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_hseq>
51 <Hsp_midline>FHLLNSGGSALSVMFAKLVGIIAGISAPIW YNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_midline>
52 </Hsp>
53 </Hit_hsps>
54 </Hit>
55 <Hit>
56 <Hit_num>2</Hit_num>
57 <Hit_id>gi|148986157|ref|ZP_01819143.1|</Hit_id>
58 <Hit_def>unknown phage protein [Streptococcus pneumoniae SP3-BS71] &gt;gi|147921871|gb|EDK72998.1| unknown phage protein [Streptococcus pneumoniae SP3-BS71]</Hit_def>
59 <Hit_accession>ZP_01819143</Hit_accession>
60 <Hit_len>1031</Hit_len>
61 <Hit_hsps>
62 <Hsp>
63 <Hsp_num>1</Hsp_num>
64 <Hsp_bit-score>174.481245259597</Hsp_bit-score>
65 <Hsp_score>441</Hsp_score>
66 <Hsp_evalue>1.54640812741294e-41</Hsp_evalue>
67 <Hsp_query-from>49</Hsp_query-from>
68 <Hsp_query-to>300</Hsp_query-to>
69 <Hsp_hit-from>679</Hsp_hit-from>
70 <Hsp_hit-to>897</Hsp_hit-to>
71 <Hsp_query-frame>0</Hsp_query-frame>
72 <Hsp_hit-frame>0</Hsp_hit-frame>
73 <Hsp_identity>104</Hsp_identity>
74 <Hsp_positive>148</Hsp_positive>
75 <Hsp_gaps>33</Hsp_gaps>
76 <Hsp_align-len>252</Hsp_align-len>
77 <Hsp_qseq>TNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWS</Hsp_qseq>
78 <Hsp_hseq>TNEGFRDAVTTVWNAILEVINAVVSEISNFVMSIFGTVVTWWTENQELIRTSAETVWNAIYTVISTILDILGPLLQAGWDNIQLIITTTWEIIKIVVETAINVVLGVIQAVMQIITGDWSGAWETIKGVFSTVWQAIQSIVQT-------IFSAIQSYISNILNGISGT----VSNIWNSIKDTVSN----------------------VLNAISSTVSSVWEGIKSTISSAINGARDAVSSAIEAIKGLFN</Hsp_hseq>
79 <Hsp_midline>TNE FR V W AI I+ V + +FVM ++G +V WW ENQELIR +AETVWNAI TV+ T++ L P++Q WD I ++TT +IK VV+T + VVLG+I+AVMQ+I GDWSGAWET+KGV T+W+ I+S+VQ IF +++ +I + + GT V IW+ IK TVSN V NAIS+ S++W I +T+ S + + + +E IK +++</Hsp_midline>
80 </Hsp>
81 </Hit_hsps>
82 </Hit>
83 <Hit>
84 <Hit_num>3</Hit_num>
85 <Hit_id>gi|77411259|ref|ZP_00787609.1|</Hit_id>
86 <Hit_def>tail tape meausure protein [Streptococcus agalactiae CJB111] &gt;gi|77162685|gb|EAO73646.1| tail tape meausure protein [Streptococcus agalactiae CJB111]</Hit_def>
87 <Hit_accession>ZP_00787609</Hit_accession>
88 <Hit_len>1039</Hit_len>
89 <Hit_hsps>
90 <Hsp>
91 <Hsp_num>1</Hsp_num>
92 <Hsp_bit-score>165.621655013498</Hsp_bit-score>
93 <Hsp_score>418</Hsp_score>
94 <Hsp_evalue>7.61538823982138e-39</Hsp_evalue>
95 <Hsp_query-from>50</Hsp_query-from>
96 <Hsp_query-to>310</Hsp_query-to>
97 <Hsp_hit-from>655</Hsp_hit-from>
98 <Hsp_hit-to>904</Hsp_hit-to>
99 <Hsp_query-frame>0</Hsp_query-frame>
100 <Hsp_hit-frame>0</Hsp_hit-frame>
101 <Hsp_identity>107</Hsp_identity>
102 <Hsp_positive>158</Hsp_positive>
103 <Hsp_gaps>11</Hsp_gaps>
104 <Hsp_align-len>261</Hsp_align-len>
105 <Hsp_qseq>NEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVF</Hsp_qseq>
106 <Hsp_hseq>HEGFRTAVTEIWNAIYAFLSVIIQQISSFVMSIWGTLTTWWTENQQLILNAANTVWTAISTVIQTIMTILGPYLQASWENIKLIITTAWDIIKVVVETAINVVLGIIKAVMQIITGDWSGAWETIKQVVSTVWEAIKSLISIVLSAIAQ-------FISNSWNGIKGTMTNLL----NSIKSVVSNVWNSIKSTISSILSSIGSTVSSVWNGMKATISGVLSGISNTVSSVWNGVKSTITNAINGAKNAVSSAINAIKNLF</Hsp_hseq>
107 <Hsp_midline>+E FRT V W AI + +S ++ + SFVM +WG + WW ENQ+LI A TVW AI TV++T+MT L P +Q +W+ I ++TT ++IK VV+T + VVLGIIKAVMQ+I GDWSGAWET+K V T+WE IKSL+ + + + Q F+ + W+ + GT+ ++ + IK+ VSN ++ I +I++SI +T +VWN + S + + IS TV SV + I + K S+A IK +F</Hsp_midline>
108 </Hsp>
109 </Hit_hsps>
110 </Hit>
111 <Hit>
112 <Hit_num>4</Hit_num>
113 <Hit_id>gi|76786754|ref|YP_329383.1|</Hit_id>
114 <Hit_def>prophage LambdaSa04, tail tape measure protein, TP901 family [Streptococcus agalactiae A909] &gt;gi|76561811|gb|ABA44395.1| prophage LambdaSa04, tail tape measure protein, TP901 family [Streptococcus agalactiae A909]</Hit_def>
115 <Hit_accession>YP_329383</Hit_accession>
116 <Hit_len>1039</Hit_len>
117 <Hit_hsps>
118 <Hsp>
119 <Hsp_num>1</Hsp_num>
120 <Hsp_bit-score>159.073262222903</Hsp_bit-score>
121 <Hsp_score>401</Hsp_score>
122 <Hsp_evalue>6.55719737745379e-37</Hsp_evalue>
123 <Hsp_query-from>50</Hsp_query-from>
124 <Hsp_query-to>310</Hsp_query-to>
125 <Hsp_hit-from>655</Hsp_hit-from>
126 <Hsp_hit-to>904</Hsp_hit-to>
127 <Hsp_query-frame>0</Hsp_query-frame>
128 <Hsp_hit-frame>0</Hsp_hit-frame>
129 <Hsp_identity>103</Hsp_identity>
130 <Hsp_positive>156</Hsp_positive>
131 <Hsp_gaps>11</Hsp_gaps>
132 <Hsp_align-len>261</Hsp_align-len>
133 <Hsp_qseq>NEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVF</Hsp_qseq>
134 <Hsp_hseq>HEGFRTAVTEIWNAIYAFLTVIIQQISSFVMSIWGTLITWWTENQQLILNATNTVWTAISTVIQTIMTILAPYLQASWENIKLIITTAWDIIKVVVETAINVVLGIIKAVMQIITGDWSGAWETIKQVVSTVWEVIKSLISIVLSAIAQ-------FISNSWNGIKGTMTNLL----NSIKGVVSNVWNGIKSTISSILSSIGSTVSSIWNGMKATISGVLSGISSTVSFVWNGVKSTITNAINGAKNAVSSAINAIKNLF</Hsp_hseq>
135 <Hsp_midline>+E FRT V W AI + ++ ++ + SFVM +WG ++ WW ENQ+LI TVW AI TV++T+MT L P +Q +W+ I ++TT ++IK VV+T + VVLGIIKAVMQ+I GDWSGAWET+K V T+WE IKSL+ + + + Q F+ + W+ + GT+ ++ + IK VSN + I +I++SI +T ++WN + S + + IS+TV V + I + K S+A IK +F</Hsp_midline>
136 </Hsp>
137 </Hit_hsps>
138 </Hit>
139 <Hit>
140 <Hit_num>5</Hit_num>
141 <Hit_id>gi|153811333|ref|ZP_01964001.1|</Hit_id>
142 <Hit_def>hypothetical protein RUMOBE_01725 [Ruminococcus obeum ATCC 29174] &gt;gi|149832460|gb|EDM87544.1| hypothetical protein RUMOBE_01725 [Ruminococcus obeum ATCC 29174]</Hit_def>
143 <Hit_accession>ZP_01964001</Hit_accession>
144 <Hit_len>1228</Hit_len>
145 <Hit_hsps>
146 <Hsp>
147 <Hsp_num>1</Hsp_num>
148 <Hsp_bit-score>157.147264343316</Hsp_bit-score>
149 <Hsp_score>396</Hsp_score>
150 <Hsp_evalue>2.33083876931167e-36</Hsp_evalue>
151 <Hsp_query-from>3</Hsp_query-from>
152 <Hsp_query-to>516</Hsp_query-to>
153 <Hsp_hit-from>573</Hsp_hit-from>
154 <Hsp_hit-to>1059</Hsp_hit-to>
155 <Hsp_query-frame>0</Hsp_query-frame>
156 <Hsp_hit-frame>0</Hsp_hit-frame>
157 <Hsp_identity>167</Hsp_identity>
158 <Hsp_positive>247</Hsp_positive>
159 <Hsp_gaps>113</Hsp_gaps>
160 <Hsp_align-len>557</Hsp_align-len>
161 <Hsp_qseq>LLNSGGSALSVMFAKLVGIIAGISAPIWXXXXXXXXXXXXXXXXYNTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQV---AIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLI-----------KQAISNAWEIIKTKT-----------------------SEIWNAITTFLSGIWEGIKTAASTAWEWIKTT-ISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIEN-IKSTVSNGWNNL---VSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLI-NGFVEGVKGAAGRLIDAVGGAVSGAIDWAKGLLGIKS</Hsp_qseq>
162 <Hsp_hseq>LVKAGG--FSGVFTKALGLI---TSPAAIVVGVIAAITAVIIHLWNTNEDFRNTITAIWQKIKDAFTT---------------FAAGISERLSALGITFSDVTSAIKTIWDGFCNLLAPVLEAAFSTIAIALQTAFNVI-----------LGIWDVFSAVFSGDWSGAWEAIKGIFSSIWDGLKEYFSTIIGAVKGVADVF---LGWFGTNWETVWNGVKTFFEGIW--------NGISSFFEGI--------------WNGISTFCTTVWNGIVTNVTAFCTTVHDTISTIFNAVKDVVSNVWETIKNVVQVAIMFIVEVVKAAFELITVPFRFIWENCRDTIISVWETIKSAVQTAINFVKDNIITPVMNAISATITTVWNAIQTTFTTVINAIKSAVQTAWNFMKDNVVTPVMNAISTTISTVWNTIKTTFTTVINAIKSAVQTAWNFMKNSVITPVMNGIKTVITTVWNAIKTAVQTVVNA---IKTTVQTVF-NAVKTTVTTIWNAIKTGTSTAWN----AVKTAVTTPINAAKSAVTSAIN------GIKS</Hsp_hseq>
163 <Hsp_midline>L+ +GG S +F K +G+I ++P +NTNE+FR + A W+ IK A +T A +E + T V +AI+T+ + L P+++ A+ I + T NVI LGI + +GDWSGAWE +KG+ +IW+G+K A+ G+ +F L + + W+TVW + IW N I++ +E I WN IST + +W I T V + TT+ I T +K V S WE IK V ++ IV +V F+LI + I + WE IK+ + +WNAI T + + IK+A TAW ++K ++ VM I + I T WN IKT+ + +N IKSA + AWN +K+++ T + N IK+ ++ WN + V TV NA I + V+T F NAV I NAI G N VK A I+A AV+ AI+ GIKS</Hsp_midline>
164 </Hsp>
165 </Hit_hsps>
166 </Hit>
167 <Hit>
168 <Hit_num>6</Hit_num>
169 <Hit_id>gi|56962696|ref|YP_174422.1|</Hit_id>
170 <Hit_def>hypothetical protein ABC0922 [Bacillus clausii KSM-K16] &gt;gi|56908934|dbj|BAD63461.1| phage-related protein [Bacillus clausii KSM-K16]</Hit_def>
171 <Hit_accession>YP_174422</Hit_accession>
172 <Hit_len>593</Hit_len>
173 <Hit_hsps>
174 <Hsp>
175 <Hsp_num>1</Hsp_num>
176 <Hsp_bit-score>146.746875793547</Hsp_bit-score>
177 <Hsp_score>369</Hsp_score>
178 <Hsp_evalue>3.12404663750498e-33</Hsp_evalue>
179 <Hsp_query-from>48</Hsp_query-from>
180 <Hsp_query-to>433</Hsp_query-to>
181 <Hsp_hit-from>123</Hsp_hit-from>
182 <Hsp_hit-to>465</Hsp_hit-to>
183 <Hsp_query-frame>0</Hsp_query-frame>
184 <Hsp_hit-frame>0</Hsp_hit-frame>
185 <Hsp_identity>112</Hsp_identity>
186 <Hsp_positive>187</Hsp_positive>
187 <Hsp_gaps>49</Hsp_gaps>
188 <Hsp_align-len>389</Hsp_align-len>
189 <Hsp_qseq>NTNEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGL---VQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSN</Hsp_qseq>
190 <Hsp_hseq>QTNETFRNGVIQAWEAIKTTMETVVATIVTFVSEKLAQIKAFWDEHGAAVMQAVTNIFNGIKSIIEPVMNGILAIMQFVWPFIVSLIQMVWGNIQGVISGALNIIMGLVKAFAGLFTGDFS-----------LMWEGIKQLFSGALEAIWNVVQLLLFGR--LLKIASSLFTGLMGVFSKMWGAISNLFLTALNGIRSFFSTIFTPIQ-------NVVMTVMGFIRNAISTG----LTTASNVVQTVLTAIRTVFLTVFNAVRNV-----------VTTAISFVQNFISTGISAARTAVTSALNAIKTTFTTIFNAVRSSVTTAMTNIKTAISN-------GIQSAWQ----AVLNFVGRFREAGKNIVNSIAEGITSAIGAVKNAISN</Hsp_hseq>
191 <Hsp_midline> TNE FR V AWEAIK+ + T V +V+FV + Q+ A+W+E+ + Q ++N I++++E VM ++ I+Q W I++++ V I+ V+ L +++G++KA + GD+S +WEGIK L A++ + VQ+ G L I +++ +M V +W I A+ + I T IQ N + TV I AIST LTT +QT L I+TV+ + ++ V VT ++ IS +T + NAI T + I+ ++++ +TA IKT ISN I++AW ++ N + + A +N N+I I++AI +K+ +SN</Hsp_midline>
192 </Hsp>
193 </Hit_hsps>
194 </Hit>
195 <Hit>
196 <Hit_num>7</Hit_num>
197 <Hit_id>gi|50914476|ref|YP_060448.1|</Hit_id>
198 <Hit_def>unknown phage protein [Streptococcus pyogenes MGAS10394] &gt;gi|40218580|gb|AAR83234.1| prophage pi2 protein [Streptococcus pyogenes] &gt;gi|50261625|gb|AAT72393.1| unknown [Streptococcus pyogenes] &gt;gi|50903550|gb|AAT87265.1| unknown phage protein [Streptococcus pyogenes MGAS10394]</Hit_def>
199 <Hit_accession>YP_060448</Hit_accession>
200 <Hit_len>1039</Hit_len>
201 <Hit_hsps>
202 <Hsp>
203 <Hsp_num>1</Hsp_num>
204 <Hsp_bit-score>146.36167621763</Hsp_bit-score>
205 <Hsp_score>368</Hsp_score>
206 <Hsp_evalue>4.74132513340056e-33</Hsp_evalue>
207 <Hsp_query-from>50</Hsp_query-from>
208 <Hsp_query-to>227</Hsp_query-to>
209 <Hsp_hit-from>655</Hsp_hit-from>
210 <Hsp_hit-to>832</Hsp_hit-to>
211 <Hsp_query-frame>0</Hsp_query-frame>
212 <Hsp_hit-frame>0</Hsp_hit-frame>
213 <Hsp_identity>78</Hsp_identity>
214 <Hsp_positive>112</Hsp_positive>
215 <Hsp_gaps>0</Hsp_gaps>
216 <Hsp_align-len>178</Hsp_align-len>
217 <Hsp_qseq>NEEFRTKVQAAWEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWD</Hsp_qseq>
218 <Hsp_hseq>NEGFRTAVIEIWNAIYAFISVIIQEISTFIMTIWGTLTTWWTENQALIQAAVETVWNAISTVIQTVMSLIGPYLEAAWANIQLIITTAWEIIKTVVETAITVVLGIIKAIMQAITGDWSGAWETIKGVLQRVWQAIQQIVTTILSAIGQFISNTWNGIKNTFSNILSAISGIVSSIWN</Hsp_hseq>
219 <Hsp_midline>NE FRT V W AI + IS ++ + +F+M +WG + WW ENQ LI+ ETVWNAI TV++TVM+ + P ++ AW I ++TT +IKTVV+T + VVLGIIKA+MQ I GDWSGAWET+KGV +W+ I+ +V + + Q +K+ + + I +V IW+</Hsp_midline>
220 </Hsp>
221 </Hit_hsps>
222 </Hit>
223 <Hit>
224 <Hit_num>8</Hit_num>
225 <Hit_id>gi|29374987|ref|NP_814140.1|</Hit_id>
226 <Hit_def>tail protein [Enterococcus faecalis V583] &gt;gi|29342445|gb|AAO80211.1| tail protein [Enterococcus faecalis V583]</Hit_def>
227 <Hit_accession>NP_814140</Hit_accession>
228 <Hit_len>1049</Hit_len>
229 <Hit_hsps>
230 <Hsp>
231 <Hsp_num>1</Hsp_num>
232 <Hsp_bit-score>139.0428842752</Hsp_bit-score>
233 <Hsp_score>349</Hsp_score>
234 <Hsp_evalue>6.84844401007043e-31</Hsp_evalue>
235 <Hsp_query-from>73</Hsp_query-from>
236 <Hsp_query-to>482</Hsp_query-to>
237 <Hsp_hit-from>545</Hsp_hit-from>
238 <Hsp_hit-to>920</Hsp_hit-to>
239 <Hsp_query-frame>0</Hsp_query-frame>
240 <Hsp_hit-frame>0</Hsp_hit-frame>
241 <Hsp_identity>110</Hsp_identity>
242 <Hsp_positive>196</Hsp_positive>
243 <Hsp_gaps>78</Hsp_gaps>
244 <Hsp_align-len>432</Hsp_align-len>
245 <Hsp_qseq>EAVVSFVMDLWGQMVAWWNENQELIRQ-------TAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVL----NVIKTVVDTGLKVVLGIIKAVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKTVWSAAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSIS-----------NALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLINGF</Hsp_qseq>
246 <Hsp_hseq>DSIVKTASGLKGSLVKTWNDITAKVSEIWKKFTDAGKKTFDGFKKTVENVFNGIKNFLQTVWNVIYAVVGAIIVNTINIWKGIFDG--------FKAYFQYL-------WDLIKAIATGVWEKIGDTVTGIINGFIGVIKGIFDAFKTFFQQIWDAVVYSVTIAWNGIKNTVTSVSTAIKNFVTPIFNAIKTTITNVFNAIKNTATNVWNAIKTTISNVVQTILNF---------------------------------VTPIFNTMKNTITNIFNAIRNTASSVWNSIKTTISNIVTSVKNTVINIFNALKNSITNIFNAIRNTASTVWNSIKSTVSNIVSATVNTVKNLFNGMKNTVSSIWDGVRNTISNVVNAVKNTISNVWGGITGTVSN----IFNGVKNAIDGPMNAAKNLVKNVV----DAIKGF</Hsp_hseq>
247 <Hsp_midline>+++V L G +V WN+ + + + ++ + VE V + +QT W++I AVV ++ N+ K + D KA Q + W+ +K +A +WE I V I+G + + + K+ + +W ++ V W+ IK TV++ TA+ + I +I+TT V+NAI A+N+W AI TT+ +V+ TI + VT F+ +K I+N + I+ S +WN+I T +S I +K + +K +I+N+ I++ T WN+IK+++S N N +K+ + W+ +++ IS + +K+T+SN W + TV+N I + V+ D +NAA+N + N + D I GF</Hsp_midline>
248 </Hsp>
249 </Hit_hsps>
250 </Hit>
251 <Hit>
252 <Hit_num>9</Hit_num>
253 <Hit_id>gi|163941333|ref|YP_001646217.1|</Hit_id>
254 <Hit_def>prophage LambdaBa01, membrane protein, putative [Bacillus weihenstephanensis KBAB4] &gt;gi|163863530|gb|ABY44589.1| prophage LambdaBa01, membrane protein, putative [Bacillus weihenstephanensis KBAB4]</Hit_def>
255 <Hit_accession>YP_001646217</Hit_accession>
256 <Hit_len>725</Hit_len>
257 <Hit_hsps>
258 <Hsp>
259 <Hsp_num>1</Hsp_num>
260 <Hsp_bit-score>138.657684699283</Hsp_bit-score>
261 <Hsp_score>348</Hsp_score>
262 <Hsp_evalue>8.15996781441799e-31</Hsp_evalue>
263 <Hsp_query-from>61</Hsp_query-from>
264 <Hsp_query-to>480</Hsp_query-to>
265 <Hsp_hit-from>142</Hsp_hit-from>
266 <Hsp_hit-to>560</Hsp_hit-to>
267 <Hsp_query-frame>0</Hsp_query-frame>
268 <Hsp_hit-frame>0</Hsp_hit-frame>
269 <Hsp_identity>118</Hsp_identity>
270 <Hsp_positive>203</Hsp_positive>
271 <Hsp_gaps>29</Hsp_gaps>
272 <Hsp_align-len>434</Hsp_align-len>
273 <Hsp_qseq>WEAIKSAISTAVEAVVSFVMDLWGQMVAWWNENQELIRQTAETVWNAIRTVVETVMTALIPIVQTAWDLILAVVTTVLNVIKTVVDTGLKVVLGIIK---AVMQMINGDWSGAWETLKGVAGTIWEGIKSLVQVAIDGLVQIFQTGLAFLKSIWDTVWGTIMAVVGPIWDWIKTTVSNAITAVWEIIQNIMTSIQTTWDTVWNAISTVASNIWTAISTTVMSVLTTIWGYIQTYLELIKT----VWS-------AAWEIIKAVFAAILLTIVGLVTGNFDLIKQAISNAWEIIKTKTSEIWNAITTFLSGIWEGIKTAASTAWEWIKTTISNVMTTIKSNIETAWNNIKTSISNALNNIKSAAENAWNNIKSAISTAIENIKSTVSNGWNNLVSTVTNAGPRIVSAVRTGFDNAVNAARNFISNAISVGGDLIN</Hsp_qseq>
274 <Hsp_hseq>WDAIKQWTIDAWNAIGEFLVGIWDGIVQWASEAWNSISESTSAVWNSIKEFLIGIWNGIVEFVVT-WGT--AILETYVGIWTSIFNFCMEIWNGIVEYLTSVLQGIATFFTEIWTSISTFFQEIWNGLVAFITPVLQGIADFFAM-----------IWNGISTVIQTVWNFITQYLQAIWTAILYFATPLFESIKNFISECWNKISSTTSLVWETIKNFLVSCWNGLVSFVTPIFEKIKSWIISVWDTISSATMAVWNAVKNFLQACWNGLVSIVTPIFDAIKNWIVNVWNAISSTTSAVWNAIKSYLSSLWNSIVSTASSIFNSIKSAISTVWNMISSASSSVWNGIKSTLSSIWNGIKSTASSVWNGLKDAIMTPVRWVTSAVSGAFNGMKSAVLGVWDGIKSGIRTAINGIIRIINKFI-DGFNTPAELLN</Hsp_hseq>
275 <Hsp_midline>W+AIK A A+ F++ +W +V W +E I ++ VWN+I+ + + ++ V T W A++ T + + ++ + +++ GI++ +V+Q I ++ W ++ IW G+ + + + G+ F +W I V+ +W++I + TA+ + SI+ WN IS+ S +W I ++S + ++ E IK+ VW A W +K A +V +VT FD IK I N W I + TS +WNAI ++LS +W I + AS+ + IK+ IS V I S + WN IK+++S+ N IKS A + WN +K AI T + + S VS +N + S V I S +RT + + FI + + +L+N</Hsp_midline>
276 </Hsp>
277 </Hit_hsps>
278 </Hit>
279 </Iteration_hits>
280 <Iteration_stat>
281 <Statistics>
282 <Statistics_db-num>6589360</Statistics_db-num>
283 <Statistics_db-len>-2041834015</Statistics_db-len>
284 <Statistics_hsp-len>0</Statistics_hsp-len>
285 <Statistics_eff-space>504129014857</Statistics_eff-space>
286 <Statistics_kappa>0.041</Statistics_kappa>
287 <Statistics_lambda>0.267</Statistics_lambda>
288 <Statistics_entropy>0.14</Statistics_entropy>
289 </Statistics>
290 </Iteration_stat>
291 </Iteration>
292 </BlastOutput_iterations>
293 </BlastOutput>