diff tools/blast2go/README.rst @ 10:8664c4c94764 draft default tip

v0.0.11 - Assorted packaging updates (overdue upload)

--- a/tools/blast2go/README.rst	Tue Dec 06 16:26:16 2022 +0000
+++ b/tools/blast2go/README.rst	Tue Dec 06 16:29:50 2022 +0000
@@ -1,7 +1,7 @@
 Galaxy wrapper for Blast2GO for pipelines, b2g4pipe
 ===================================================
 
-This wrapper is copyright 2011-2015 by Peter Cock, The James Hutton Institute
+This wrapper is copyright 2011-2017 by Peter Cock, The James Hutton Institute
 (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved.
 See the licence text below (MIT licence).
 
@@ -24,22 +24,22 @@
 Peter Cock, Bjoern Gruening, Konrad Paszkiewicz and Leighton Pritchard (2013).
 Galaxy tools and workflows for sequence analysis with applications
 in molecular plant pathology. PeerJ 1:e167
-http://dx.doi.org/10.7717/peerj.167
+https://doi.org/10.7717/peerj.167
 
 S. Geotz et al. (2008).
 High-throughput functional annotation and data mining with the Blast2GO suite.
 Nucleic Acids Res. 36(10):3420-3435.
-http://dx.doi.org/10.1093/nar/gkn176
+https://doi.org/10.1093/nar/gkn176
 
 A. Conesa and S. Geotz (2008).
 Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics.
 International Journal of Plant Genomics. 619832.
-http://dx.doi.org/10.1155/2008/619832
+https://doi.org/10.1155/2008/619832
 
 A. Conesa et al. (2005).
 Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research.
 Bioinformatics 21:3674-3676.
-http://dx.doi.org/10.1093/bioinformatics/bti610
+https://doi.org/10.1093/bioinformatics/bti610
 
 See also http://www.blast2go.com/
 
@@ -164,8 +164,16 @@
           of the Blast2GO command line tool. For now b2g4pipe v2.5 is still
           available as a free download.
         - Tool definition now embeds citation information.
-v0.0.10 - Reorder XML elements (internal change only).
+v0.0.10 - Python 3 ready
+        - Reorder XML elements (internal change only).
         - Planemo for Tool Shed upload (``.shed.yml``, internal change only).
+v0.0.11 - Fix parameter help text which was not being displayed.
+        - PEP8 style updates to the Python script (internal change only).
+        - Use ``<command detect_errors="aggressive">`` (internal change only).
+        - Single quote command line arguments (internal change only).
+        - Python 3 compatible syntax.
+        - Record ``b2g4pipe_v2.5.zip`` SHA256 checksum, and download this via
+          the Galaxy package cache.
 ======= ======================================================================
 
 
@@ -195,7 +203,7 @@
 
     $ planemo shed_upload --tar_only  ~/repositories/galaxy_blast/tools/blast2go/
     ...
-    $ tar -tzf shed_upload.tar.gz 
+    $ tar -tzf shed_upload.tar.gz
     test-data/blastp_sample.blast2go.tabular
     test-data/blastp_sample.xml
     tool-data/blast2go.loc.sample