changeset 4:c8c04cd07ca0 draft

Uploaded v0.0.5, quotes filenames in case they contain spaces.
author peterjc
date Wed, 20 Feb 2013 13:33:47 -0500
parents a5594772282c
children e4419efbefad
files tools/ncbi_blast_plus/blast2go.txt tools/ncbi_blast_plus/blast2go.xml
diffstat 2 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tools/ncbi_blast_plus/blast2go.txt	Fri Feb 08 10:33:50 2013 -0500
+++ b/tools/ncbi_blast_plus/blast2go.txt	Wed Feb 20 13:33:47 2013 -0500
@@ -94,6 +94,7 @@
 v0.0.3 - Include sample loc file, tool-data/blast2go.loc.sample
 v0.0.4 - Include repository_dependencies.xml file for 'blastxml' format
          (previously included in the core Galaxy installation)
+v0.0.5 - Quote arguments in case of spaces in filenames (internal change)
 
 
 Developers
--- a/tools/ncbi_blast_plus/blast2go.xml	Fri Feb 08 10:33:50 2013 -0500
+++ b/tools/ncbi_blast_plus/blast2go.xml	Wed Feb 20 13:33:47 2013 -0500
@@ -1,7 +1,7 @@
-<tool id="blast2go" name="Blast2GO" version="0.0.3">
+<tool id="blast2go" name="Blast2GO" version="0.0.5">
     <description>Maps BLAST results to GO annotation terms</description>
     <command interpreter="python">
-        blast2go.py $xml ${prop.fields.path} $tab
+        blast2go.py "${xml}" "${prop.fields.path}" "${tab}"
     </command>
     <inputs>
         <param name="xml" type="data" format="blastxml" label="BLAST XML results" description="You must have run BLAST against a protein database such as the NCBI non-redundant (NR) database. Use BLASTX for nucleotide queries, BLASTP for protein queries." />