Mercurial > repos > peterjc > blast_rbh

annotate test-data/rhodopsin_nucs.fasta @ 5:8f4500f6f2aa draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Refactored to use more than one Python file (internal change only).
author peterjc
date Tue, 06 Dec 2022 15:53:36 +0000
parents d8d9a9069586
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
parents:
diff changeset
1 >gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
4
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
2 ATGAACGGGACGGAGGGCCCGAACTTCTACGTGCCCTTCTCCAACAAAACGGGTGTGGTACGCAGCCCCTTCGAGTACCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
3 ACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTCCTGCTCATCGTGCTTGGCTTCCCCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
4 TCAACTTCCTCACGCTCTACGTCACGGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
5 GTGGCTGACCTCTTCATGGTCTTCGGTGGCTTCACCACCACCCTCTACACCTCTCTGCATGGATACTTTGTCTTTGGGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
6 CACAGGATGCAATTTGGAGGGCTTCTTTGCCACACTGGGCGGTGAAATTGCCCTGTGGTCTTTGGTGGTCCTGGCCATTG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
7 AGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTTGGGGAGAACCATGCCATAATGGGCGTCGCTTTCACC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
8 TGGGTCATGGCACTGGCCTGCGCTGCACCCCCCCTCGTTGGTTGGTCCAGGTACATCCCTGAAGGCATGCAGTGTTCATG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
9 CGGGATCGACTACTACACACTCAAGCCAGAAGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACTTCACCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
10 TCCCCATGATCGTCATCTTCTTTTGCTACGGGCAGCTTGTCTTCACAGTCAAGGAGGCGGCAGCCCAGCAGCAGGAGTCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
11 GCCACCACCCAGAAGGCTGAGAAGGAGGTCACTCGCATGGTCATCATCATGGTCATTGCTTTCCTGATCTGTTGGGTGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
12 CTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGGTCCAACTTTGGCCCCATCTTCATGACACTCCCGGCGTTCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
13 TCGCAAAGTCCTCCTCCATCTACAACCCTGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACTACC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
14 CTCTGCTGTGGCAAGAACCCACTGGGTGATGACGAGGCTTCCACAACCGGTTCCAAGACGGAGACCAGCCAGGTGGCACC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
15 GGCCTAA
0
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
parents:
diff changeset
16 >gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds
4
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
17 TCTTTCTAGTTTGGGGGGGGGGACTTTAAAGAGCCGCCAATATGAACGGAACAGAAGGCCCAAACTTTTACATACCCATG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
18 TCCAACAAGACTGGGGTGGTGCGAAGCCCCTTTGAATACCCTCAGTATTACCTGGCAGAGCCATGGCAATATTCCATTCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
19 GTGCGCGTACATGTTCCTGCTCATTCTACTTGGGTTCCCAATCAACTTCATGACCTTGTACGTCACCATCCAGCACAAGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
20 AGCTCCGGACACCCTTAAACTATATCCTGCTGAATTTGGCCTTTGCCAACCACTTCATGGTCCTGTGTGGATTCACGGTG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
21 ACAATGTACTCCTCAATGAACGGATACTTCATCCTCGGAGCCACCGGTTGCTATGTTGAAGGCTTCTTCGCTACCCTTGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
22 TGGTGAAATCGCCCTTTGGTCCCTGGTGGTCTTGGCCATTGAACGATACGTGGTCGTCTGTAAGCCCATGAGCAACTTCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
23 GATTTAGTGAGAACCATGCCGTCATGGGCGTAGCGTTCACCTGGATAATGGCTTTGTCCTGTGCTGTTCCTCCACTCCTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
24 GGATGGTCCAGGTACATCCCCGAGGGCATGCAGTGCTCCTGCGGAGTCGACTACTACACCCTGAAGCCCGAGGTCAACAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
25 CGAGTCCTTCGTCATCTACATGTTCGTCGTCCACTTCACCATCCCCCTGATTATCATTTTCTTCTGCTATGGCCGCCTGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
26 TGTGCACTGTGAAAGAGGCTGCAGCTCAACAGCAAGAGTCCGCCACCACCCAGAAGGCCGAGAAAGAGGTGACCAGGATG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
27 GTGATCATCATGGTGGTCTTCTTCCTTATCTGTTGGGTCCCCTACGCCTCTGTCGCTTTCTTCATCTTCAGCAATCAGGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
28 CTCTGAGTTCGGCCCCATCTTCATGACCGTCCCAGCTTTCTTTGCCAAGAGTTCTTCCATCTACAACCCCGTCATCTACA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
29 TCATGCTCAACAAGCAGTTCCGTAACTGCATGATCACCACCCTGTGCTGCGGCAAGAATCCCTTTGGAGAAGACGATGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
30 TCCTCTGCCGCCACCTCCAAGACAGAGGCTTCTTCTGTTTCTTCCAGCCAGGTGTCTCCTGCATAAGACCTTCCACCAGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
31 CCTGTCTCAGGGTCCGCTGCCTCACACAGCTCCCACCGCCCCAACTCCGTCTCCTGCTCGCTAAGGCGGCGAAGTTCCCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
32 TTCCATTACATAAAACGTATCTGTTCAAGAAAGGCGACGACGAAGGAGAAGAAGAGGAGCCCCCCCGAACCCCTTCGCTG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
33 CTGCTGAAAACGACTTGATTGCTTCTGCAACGCAACGGGGCCTTACGGCAGCGAAGGGGTTGTCATCCGGACGCGCCAAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
34 AATTCCTTCGAGACTGTAAATATCTTAAAGGAACCGTCCTGCTAGTTACCGACGCCGCTCCTGTAGCCGCCGTTCCCCCG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
35 CACTCCGGCCGGTTCATACCTCTTATTTTTTTGCAATGCAACAGAAAATAATATTTTTGTTCCCACGGCTTTTCCCGGTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
36 AGGTCTGGTAGTGGCGGAGATTGGCCGACCCCTCGCACCTGTAATAAAGCGCAG
0
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
parents:
diff changeset
37 >gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
4
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
38 GTGCCCTTCTCCAACAAGACAGGCGTGGTGCGCAGTCCCTTCGAGCATCCACAGTACTACCTGGCCGAGCCATGGCAGTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
39 CTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTCGGCTTCCCCATCAACTTCCTCACGCTCTATGTCACGGTTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
40 AGCACAAGAAGCTGCGTACGCCTCTCAACTACATCCTGCTCAACCTGGCCGTGGCCGACCTCTTCATGGTCTTCGGAGGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
41 TTCACCACCACCCTCTACACCTCCCTGCATGGATACTTTGTCTTCGGGCCTACGGGATGCAATCTGGAGGGCTTTTTTGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
42 CACCCTGGGAGGTATGAGCTGAGATGCGGGTAAGGAGGAGGCATAGAGGCATCTGGGAACAGTCCCAAGCTTGGGGTGAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
43 GGCTAAGAGGCCTTCTTCCTTGTTCTGTCATTGGCGTCGTCCGAAGCCCTCACTTAATCAACAAACAGTTTGGTGGTGAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
44 GCGCTGAGCTCCATTTGGAGAGGGCAGGTATCGAGCACTGTTTTATCCCCCCTGGAGTGGTGCCATTGCCTTGCTTTACA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
45 GCAAAGAAACTGAGGATGAGAGGAGTCGAGGGTCTTGCCAGGTCACATCATGGCAGAGACAGAGCTGAGTTTCAACCCTG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
46 CATCTATGTGCAGTTTCCCTTGGAGCAGCTATGTTAGGTCAGACCCACGGTGGGCACTGGGGAGAGAGCTGCACAAGACA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
47 GGTCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
48 NNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTGATTGCCAGGAGTGATGTGCAGCGCAAATGTCTGAATTCCATTATTAT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
49 GTGCTCCTTCTTCCTCTGAGCCAAACATCCATCTTCATGGCTCCTAGAATTGGGTCCCACCCACATGAGCAGGTCATTTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
50 GTTTCCCTAGAGGGGAGAGGTCACTGCTGTGGAGGGAGGGAAGGTTCGTCCCGCTCCATGTTTCTGTTGTCTCTGCAATG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
51 CCTTTCTCTAGGGACTCTGCCTATTGCCCCAAGAAGGACACATTCTTCTGTAAAAACTCCCTCCTGGGTTCCCAGTCTAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
52 TCAAGACCTCTAAACTGATTTCCATGTCCCTCATGAACCCAAAGCTCTAACTGAATTAAACTTCTCAGGACTTACTCCAC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
53 TCTCCTCGTCCATCATGCAGCCCCTCTGCCCAGCACCCTATCTCCTCTTCTTCCCAGTGTCTGAGCCCACTGTACCCTGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
54 GACTTCGCTCCAGGCCTGCCCCAGGCTGCCTTCTCAGGTGCCCTCTCCCACATAGGAGGAGCACGGCCTCCTTAGACAGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
55 CGTGGGGTGCAGGTTGGTGGCATGCTGACTGATAGCTGACTGCCTTGCAGGTGAAATTGCCCTGTGGTCCTTGGTGGTCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
56 TGGCCATCGAGCGGTACGTGGTGGTATGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCCTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
57 GCCCTCACCTGGGTCATGGCACTGGCCTGCGCCGCGCCCCCGCTAGTCGGCTGGTCCAGGTAATGGCACTGAACAGAAGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
58 GAAGTGCCTCTGAGGTCTTCTTAGGGTCCCCCAGCTGGGACTCAAACCTAGGGCTGTCTGGTTCCAGGCACGGAACTGGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
59 GACTCCACTGGGGTTGGGGTTTAGGGCAAGGAAGGAGAGGATCAGACCCTAATGTTGTTACGTGGGTTGGTCCGCATGTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
60 AAGGAGAATCCAAGACACCCAATCCTTCACCTTGGCTGTGCCCCTAATCCTCATCTAAGCCAGGTTCAGATTCCAATCCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
61 CTTTGGCCCAGTGCTCCGTGGGAAGCTCCCTCTGACCTTGGGCCTCAGCGCCTGGGGTTGCTGAGCCTTCCTAGTATAGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
62 TGGTGACATCGTAGCCCCTGGGACCTGGATCCTGCCCAGTCTGCAGGCCATCATCTCCAAATGGGGCTGAGATGAGATGT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
63 GAGGAAAGAGGGGAGACAGTGGTTTGGAAAACTGGACTGGTGGCTTTTTTGGGTTTCCAGAGGACTCATCTTCCTCTGCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
64 TCTAGAATATTCCCACTCTCTCTTCCCTTTCCTCATTCTTCCTGGGTTATTTTTTTTTCCCTTTGCTGAATTCGAGCCCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
65 ATTCCCTCCAGCCTCTTTCCCTGTCTTATCTAGCCCAGTCCAGTTATATTCTCATAGGCAGAGGCAACAGATGCTCCAAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
66 TTTTCTGAGGTCGGTTCCAACATCGCCACCCTCTAAAATCAGTGAAACATCCTAACTACATGCCTCATAGTCCTCCTGTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
67 TCCAAAAACTGCAAAGATCTCCTGGTTACCCTGTATGCCCATCTTTGGGCTAGAAAATCCTCTCACCCTGTTAATAGTAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
68 GACCCTGGTTTGTACAAACTGCCTCAAACACAGAGTTTAGGGGCTTTTCCCTTCTCTCCGCCAACCTCTGACAGGCAGAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
69 TCTGAGGCCTGGCCTCCAGCTGCTGCGGGGAGCAGGTCTGGTAAAGAATCCTGTGCAGGTCAGTGGTATACAGGTCCTGT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
70 CAGGTGACAGCCTGGGCGAGAGACTGGAAAGTATCAGGATAACACGGCTGCCAGACGAACAACAAAACAACACTGAATTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
71 ACAAGGCGCATTCGAATCCTCTCTCAGTCCATTTGATCCTCAGTCACACAGCCGAGTAGACACTTTATCAACTCATTTAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
72 CAGAAAGGGAAAGTGAAGCCCAGAGCGAGGCCAGCAACGTGGCAGGTCACTCTGGTCATCTAGGGCCTGTTCCCAACTCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
73 TTCACATGTGGGTCTCCAATATGTTCCCTCCTGTCCCAATCTCTGCCGGCCCTCAGGTACATCCCAGAGGGCATGCAGTG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
74 CTCATGTGGAATCGACTACTACACCCTCAAGCCGGAGGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
75 TCACCATCCCTATGATTGTCATATTCTTTTGCTATGGACAGCTGGTCTTCACCGTCAAGGAGGTAAGGTCATGTGTTGGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
76 CACTGGGGACATGCACACTGAGTGAATGGAGCCCAGCTCCATTCCCAGAGTTGCCACAGTCTGGACACCTGACCTTGTGT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
77 CCCTGCAGGCAGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAGGTCACCCGTATGGTCATCATC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
78 ATGGTCATTGCTTTCCTAATCTGTTGGCTGCCGTATGCCGGCGTGGCATTCTACATCTTCACCCACCAGGGCTCTAACTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
79 TGGCCCCATCTTCATGACCCTCCCGGCATTCTTTGCCAAGTCGTCCTCCATCTACAACCCTGTCATCTATATCATGATGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
80 ACAAGCAGGTGCCAGGTGGTAGGGAGGGAGGGTCTGGGTCCCCCAGGCTGCAGGCACTGCCCACAGAGGACAAGCCACAT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
81 CCTTGACTAGGCAGACCCCAGTCTTCCCATCTGCAAAATTAGGCAGGGGAGTTCGTCTCCCCCAGGCATCAGAGACATCG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
82 GGGAGAAATGCACATTTCTGGAGATGAATCAGCATCTCAGGGTGGGCCCAGGAACCTGCACTTCTAAAAACCATTCCACA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
83 TGACTCTGAGGCTAGCATGAGAAGTGATGATCCACATGGTTCTGGAGGCCTGCTTTAAAAGTCAAGTGGTCAAAGTCCCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
84 AGCCTGGGAACGGGATGGTGCCAGTCTCCATTAAAGAGATCAAAAGGAGCTAGAAAGTCTTGTGATGAAAGATGAAGGGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
85 TAAAGCCGTCCTTTAACACAGATCAGTGATTTCTCTGCAGAATCCATGACCCAGTGGGAAAAAGTGGTCCCTGGAGTCAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
86 GCATATTGGATTCAAATCCTAGCTCTGCTATTTTCTAGCTATGTAACCTTGGGCAAGTCATCTCCCTTCTCTGTGCTTCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
87 GTTTCTTCTTTCATAGAAAGGGTAAAATCCCAAACTCTTGGGTTAAATGAGATAACTTACATAGCCCTTGATATGCAGAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
88 GCATTATGGAATGTCGTTAGTGACAAAGTTCCCTTGGGTTTGGTCCCTGGTATCTCTGGAGTGAGATTGCATATGTTCCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
89 TTCAGAGGGTCAGATTTGGGATGAGAGTGGAGGCTGCGAGGGCCTGAGTGGGAAGGGATTGGAGGCAAATCTCACCAACC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
90 ATGTCAGTTTGCTACACACACTTTGGGTGGACCCTGACCCTGACTCATGCTTCTTGCCTTCCAGTTCCGGAACTGCATGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
91 TCACTACCCTCTGCTGTGGCAAGAACCCACTGGGTGACGATGAGGCCTCCACCACTGCCTC
0
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
parents:
diff changeset
92 >gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds
4
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
93 GTGCCCTTCTCCAACAAGACGGGTGTGGTGCGCAGCCCCTTCGAGTACCCGCAGTACTACCTGGCTGAGCCCTGGCAGTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
94 CTCCATGCTGGCTGCCTACATGTTTCTGCTGATCGTGCTCGGATTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
95 AGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCTGTGGCCAACCTCTTCATGGTCTTTGGAGGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
96 TTCACCACCACCCTGTATACCTCTATGCATGGATACTTCGTCTTCGGGGCCACGGGATGCAATCTGGAGGGCTTCTTTGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
97 CACGCTGGGCGGTGAAATCGCCCTGTGGTCCCTGGTGGTCCTGGCCATCGAGCGGTATGTGGTGGTCTGCAAGCCCATGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
98 GCAACTTCCGCTTTGGGGAGAACCACGCCATCATGGGCCTCGCCTTCACGTGGGTCATGGCACTGGCCTGCGCTGCACCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
99 CCACTAGCCGGCTGGTCCAGGTACATCCCAGAGGGCATGCAGTGCTCGTGTGGGATTGACTACTACACGCTCAAACCGGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
100 GGTCAACAACGAGTCCTTCGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTGTCATTTTCTTCTGCTACG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
101 GACAGCTGGTGTTCACAGTGAAGGAGGCGGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAAGTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
102 ACGCGCATGGTCATCATCATGGTCGTTGCGTTCCTAATCTGTTGGCTGCCCTACGCCAGCGTGGCATTCTACATCTTTAC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
103 CCACCAGGGCTCTAACTTTGGCCCTGTCTTCATGACCATCCCGGCATTCTTCGCCAAGTCATCCTCCATCTACAACCCGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
104 TCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCCTCTGCTGTGGCAAGAACCCACTGGGTGAT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
105 GACGAAGCATCCACCACTGCCTC
0
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
parents:
diff changeset
106 >gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds
4
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
107 ATGAACGGGACCGAGGGCCCAAACTTCTACGTGCCTTTCTCCAACAAGACGGGCGTCGTACGCAGCCCCTTCGAGGCGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
108 GCAGTACTACCTGGCTGAGCCATGGCAGTTCAGCATGCTGGCCGCCTACATGTTCCTGCTGATCATGCTTGGCTTCCCCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
109 TCAACTTCCTCACGCTGTACGTCACAGTCCAGCACAAGAAGCTGAGGACCCCCCTCAACTACATCCTGCTCAACCTGGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
110 GTGGCAGATCTCTTCATGGTGTTCGGGGGCTTCACCACCACCCTGTATACCTCTCTGCACGGGTACTTCGTGTTCGGTCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
111 GACGGGCTGCAACCTCGAGGGCTTCTTTGCCACCTTAGGCGGTGAAATTGCACTGTGGTCCTTGGTGGTGCTAGCCATCG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
112 AGCGGTACGTAGTGGTGTGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCGTCGCATTCACC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
113 TGGGTCATGGCTCTGGCCTGTGCGGCCCCCCCCCTCGTCGGCTGGTCTAGATACATCCCGGAGGGGATGCAGTGCTCGTG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
114 CGGGATCGATTACTACACGCCCCACGAGGAGACCAACAATGAGTCGTTCGTCATCTACATGTTCGTTGTACACTTCATCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
115 TCCCCCTGATTGTCATATTCTTCTGCTACGGGCAGCTGGTCTTCACCGTCAAGGAGGCTGCAGCCCAGCAGCAGGAGTCG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
116 GCCACCACTCAGAAGGCCGAGAAGGAGGTCACGCGTATGGTCATCATCATGGTCATCGCTTTCCTCATATGCTGGCTGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
117 CTACGCAGGTGTGGCGTTCTACATCTTCACCCATCAGGGATCCGACTTTGGCCCCATCTTCATGACCATCCCGGCTTTCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
118 TTGCCAAGACGTCTGCCGTCTATAACCCCGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGGTCACCACT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
119 CTCTGCTGTGGCAAGAACCCCCTAGGTGACGACGAGGCCTCCACGACCGTGTCCAAGACAGAGACCAGCCAAGTGGCCCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
120 TGCCTAA
0
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
parents:
diff changeset
121 >gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds
4
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
122 CCGCTACTGACGAACCGCAACCATGAACGGCACTGAGGGACCTAACTTCTACATCCCCATGTCAAACGCCACTGGTGTAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
123 TGAGGAGTCCATTTGAATACCCGCAGTACTACCTTGCAGAACCATGGGCTTTCTCAGCTCTGTCTGCCTACATGTTCTTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
124 CTGATTATCGCCGGATTCCCCATCAACTTCCTCACCCTGTATGTCACCATCGAACATAAGAAACTGAGGACCCCACTGAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
125 CTACATTCTGCTGAACCTGGCCGTGGCCGACCTCTTCATGGTGTTTGGCGGATTCACCACCACGATGTACACCTCCATGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
126 ACGGCTACTTTGTCTTCGGCCCCACCGGCTGCAACATCGAAGGGTTCTTCGCCACCCTCGGCGGCGAGATTGCCCTCTGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
127 TGCCTCGTTGTCCTGGCCATTGAAAGGTGGATGGTCGTCTGCAAGCCAGTGACCAATTTCCGCTTCGGTGAGAGCCATGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
128 CATCATGGGTGTCATGGTGACCTGGACCATGGCATTGGCCTGTGCCCTCCCCCCTCTCTTCGGCTGGTCTCGGTACATTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
129 CGGAAGGTCTGCAGTGCTCGTGCGGGATCGACTACTATACCCGGGCGCCTGGGATCAACAATGAGTCCTTTGTGATCTAC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
130 ATGTTTACCTGCCACTTCTCCATCCCACTCGCCGTCATCTCTTTCTGCTACGGCCGACTGGTGTGCACCGTCAAAGAGGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
131 CGCTGCCCAGCAACAGGAGTCCGAGACCACCCAGAGGGCTGAGCGGGAGGTCACCCGCATGGTCGTCATCATGGTCATCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
132 CCTTCCTGGTCTGCTGGGTGCCCTATGCCAGTGTGGCCTGGTACATCTTTACCCACCAGGGAAGCACTTTTGGGCCCATC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
133 TTCATGACCATTCCATCCTTCTTTGCCAAGAGTTCAGCCCTCTACAACCCCATGATCTACATCTGCATGAACAAGCAGTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
134 CCGCCATTGCATGATCACCACCCTCTGCTGTGGGAAGAACCCCTTCGAGGAGGAGGATGGAGCGTCCGCCACTAGCTCTA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
135 AAACTGAGGCTTCATCCGTGTCCTCCAGCTCTGTCTCCCCGGCATAAACCTTGTTTGACCGAACACCACGCATCAACACA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
136 AAGACCAAGAATGCTGACTAAATGCTAACATTTCAGGGAAATCCAAAGACTTTTTACTATTTTTTTACACAACCATATAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
137 GTTGCAAACAGAGGTTTAGCCCTGTTTACAGGTTGTCATCAATGTGATGTCAGTATGTACAATATAGTCAACTTGATAGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
138 AAGTTGTTGGCTTATTTCAGATTGTATGGGCAATGTAATCAACCATATGTGAAATAAATTGCAA