Mercurial > repos > peterjc > blast_rbh

annotate test-data/k12_edited_proteins.fasta @ 1:ff0b814c1320 draft

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Uploaded v0.1.5, NCBI BLAST+ 2.2.30 etc
author peterjc
date Fri, 21 Nov 2014 06:57:14 -0500
parents b828ca44a313
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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0
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
1 >gi|16127995|ref|NP_414542.1| thr operon leader peptide [Escherichia coli str. K-12 substr. MG1655]
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
2 MKRISTTITTTITITTGNGAG
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
3 >gi|16127996|ref|NP_414543.1| fused aspartokinase I and homoserine dehydrogenase I [Escherichia coli str. K-12 substr. MG1655]
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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4 MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNISDAERI
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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5 FAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAALICRGEKMSIAIMAGVLEA
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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6 RGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYS
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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7 AAVLAACLRADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPC
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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8 LIKNTGNPQAPGTLIGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLIT
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
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9 QSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGISAKFFAAL
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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10 ARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQSW
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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11 LKNKHIDLRVCGVANSKALLTNVHGLNLENWQEELAQAKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAV
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
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12 ADQYADFLREGFHVVTPNKKANTSSMDYYHQLRYAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELM
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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13 KFSGILSGSLSYIFGKLDEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIE
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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14 IEPVLPAEFNAEGDVAAFMANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDPLFK
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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15 VKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLRTLSWKLGV
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
16 >gi|16127997|ref|NP_414544.1| homoserine kinase [Escherichia coli str. K-12 substr. MG1655]
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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17 MVKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEPRENIVYQCWE
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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18 RFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHY
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
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19 DNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGF
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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20 IHACYSRQPELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPETAQRVA
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
21 DWLGKNYLQNQEGFVHICRLDTAGARVLEN
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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22 >NP_414544_near_copy
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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23 MKVYAPASSANMSVGFDVLGAAVTPVDGALLGDVVTVEAAETFSLNNLGRFADKLPSEPRENIVYQCWE
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
24 RFCQELGKQIPVAMTLEKNMPIGSGLGSSACSVVAALMAMNEHCGKPLNDTRLLALMGELEGRISGSIHY
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
25 DNVAPCFLGGMQLMIEENDIISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGF
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
26 IHACYSRQPELAAKLMKDVIAEPYRERLLPGFRQARQAVAEIGAVASGISGSGPTLFALCDKPETAQRVA
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
27 DWLGKNYLQNQEGFVHICRLDTAGARVLEN
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
28 >gi|16127998|ref|NP_414545.1| threonine synthase [Escherichia coli str. K-12 substr. MG1655]
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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29 MKLYNLKDHNEQVSFAQAVTQGLGKNQGLFFPHDLPEFSLTEIDEMLKLDFVTRSAKILSAFIGDEIPQE
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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30 ILEERVRAAFAFPAPVANVESDVGCLELFHGPTLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDTGAA
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
31 VAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNS
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
32 ANSINISRLLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVNDTVP
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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33 RFLHDGQWSPKATQATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTS
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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34 EPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVEAILGETLDLPKELAERADLPLLSHNLPADFAAL
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
35 RKLMMNHQ
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
36 >NP_414546_near_copy_1
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
37 MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGYYWDGGHWRDHGWWKQHYEWRGNRWHL
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
38 HGPPPPPRHHKKAPHDHHGGHGPGKHHRV
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
39 >NP_414546_near_copy_2
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
40 MKKMQSIVLALSLVLVAPMAAQAAEITLVPSVKLQIGDRDNRGYYWDGGHWRDHGWWKQHYEWRGNRWHL
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
41 HGPPPPPRHHKKAPHDHHGGHGPGKHHRRI
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
42 >gi|16128000|ref|NP_414547.1| peroxide resistance protein, lowers intracellular iron [Escherichia coli str. K-12 substr. MG1655]
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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43 MLILISPAKTLDYQSPLTTTRYTLPELLDNSQQLIHEARKLTPPQISTLMRISDKLAGINAARFHDWQPD
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
44 FTPANARQAILAFKGDVYTGLQAETFSEDDFDFAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENARG
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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45 KDLYQFWGDIITNKLNEALAAQGDNVVINLASDEYFKSVKPKKLNAEIIKPVFLDEKNGKFKIISFYAKK
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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46 ARGLMSRFIIENRLTKPEQLTGFNSEGYFFDEDSSSNGELVFKRYEQR
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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47 >gi|16128001|ref|NP_414548.1| putative transporter [Escherichia coli str. K-12 substr. MG1655]
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
48 MPDFFSFINSVLWGSVMIYLLFGAGCWFTFRTGFVQFRYIRQFGKSLKNSIHPQPGGLTSFQSLCTSLAA
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
49 RVGSGNLAGVALAITAGGPGAVFWMWVAAFIGMATSFAECSLAQLYKERDVNGQFRGGPAWYMARGLGMR
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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50 WMGVLFAVFLLIAYGIIFSGVQANAVARALSFSFDFPPLVTGIILAVFTLLAITRGLHGVARLMQGFVPL
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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51 MAIIWVLTSLVICVMNIGQLPHVIWSIFESAFGWQEAAGGAAGYTLSQAITNGFQRSMFSNEAGMGSTPN
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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52 AAAAAASWPPHPAAQGIVQMIGIFIDTLVICTASAMLILLAGNGTTYMPLEGIQLIQKAMRVLMGSWGAE
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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53 FVTLVVILFAFSSIVANYIYAENNLFFLRLNNPKAIWCLRICTFATVIGGTLLSLPLMWQLADIIMACMA
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
54 ITNLTAILLLSPVVHTIASDYLRQRKLGVRPVFDPLRYPDIGRQLSPDAWDDVSQE
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
55 >gi|16128002|ref|NP_414549.1| transaldolase B [Escherichia coli str. K-12 substr. MG1655]
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
56 MTDKLTSLRQYTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQIPEYRKLIDDAVAWAKQQSNDRAQQI
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
57 VDATDKLAVNIGLEILKLVPGRISTEVDARLSYDTEASIAKAKRLIKLYNDAGISNDRILIKLASTWQGI
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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58 RAAEQLEKEGINCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKANTDKKEYAPAEDPGVVSVSEIY
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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59 QYYKEHGYETVVMGASFRNIGEILELAGCDRLTIAPALLKELAESEGAIERKLSYTGEVKARPARITESE
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
60 FLWQHNQDPMAVDKLAEGIRKFAIDQEKLEKMIGDLL
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
61 >gi|16128003|ref|NP_414550.1| molybdochelatase incorporating molybdenum into molybdopterin [Escherichia coli str. K-12 substr. MG1655]
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
62 MNTLRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLV
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
63 LTTGGTGPARRDVTPDATLAVADREMPGFGEQMRQISLHFVPTAILSRQVGVIRKQALILNLPGQPKSIK
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
64 ETLEGVKDAEGNVVVHGIFASVPYCIQLLEGPYVETAPEVVAAFRPKSARRDVSE
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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65 >gi|16128004|ref|NP_414551.1| inner membrane protein, Grp1_Fun34_YaaH family [Escherichia coli str. K-12 substr. MG1655]
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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diff changeset
66 MGNTKLANPAPLGLMGFGMTTILLNLHNVGYFALDGIILAMGIFYGGIAQIFAGLLEYKKGNTFGLTAFT
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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67 SYGSFWLTLVAILLMPKLGLTDAPNAQFLGVYLGLWGVFTLFMFFGTLKGARVLQFVFFSLTVLFALLAI
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
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68 GNIAGNAAIIHFAGWIGLICGASAIYLAMGEVLNEQFGRTVLPIGESH
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
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69