Mercurial > repos > peterjc > blast_rbh

annotate test-data/rhodopsin_nucs.fasta @ 6:b2f91cbed8d9 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
v0.3.0 - Updated to BLAST+ 2.9.0 via conda; removed legacy tool packages.
author peterjc
date Tue, 06 Dec 2022 16:03:13 +0000
parents d8d9a9069586
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
parents:
diff changeset
1 >gi|57163782|ref|NM_001009242.1| Felis catus rhodopsin (RHO), mRNA
4
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
2 ATGAACGGGACGGAGGGCCCGAACTTCTACGTGCCCTTCTCCAACAAAACGGGTGTGGTACGCAGCCCCTTCGAGTACCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
3 ACAGTACTACCTGGCTGAGCCATGGCAGTTCTCCATGCTGGCCGCCTACATGTTCCTGCTCATCGTGCTTGGCTTCCCCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
4 TCAACTTCCTCACGCTCTACGTCACGGTCCAGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
5 GTGGCTGACCTCTTCATGGTCTTCGGTGGCTTCACCACCACCCTCTACACCTCTCTGCATGGATACTTTGTCTTTGGGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
6 CACAGGATGCAATTTGGAGGGCTTCTTTGCCACACTGGGCGGTGAAATTGCCCTGTGGTCTTTGGTGGTCCTGGCCATTG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
7 AGCGGTACGTGGTGGTGTGTAAGCCCATGAGCAACTTCCGCTTTGGGGAGAACCATGCCATAATGGGCGTCGCTTTCACC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
8 TGGGTCATGGCACTGGCCTGCGCTGCACCCCCCCTCGTTGGTTGGTCCAGGTACATCCCTGAAGGCATGCAGTGTTCATG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
9 CGGGATCGACTACTACACACTCAAGCCAGAAGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACTTCACCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
10 TCCCCATGATCGTCATCTTCTTTTGCTACGGGCAGCTTGTCTTCACAGTCAAGGAGGCGGCAGCCCAGCAGCAGGAGTCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
11 GCCACCACCCAGAAGGCTGAGAAGGAGGTCACTCGCATGGTCATCATCATGGTCATTGCTTTCCTGATCTGTTGGGTGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
12 CTACGCCAGCGTGGCATTCTACATCTTCACCCACCAGGGGTCCAACTTTGGCCCCATCTTCATGACACTCCCGGCGTTCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
13 TCGCAAAGTCCTCCTCCATCTACAACCCTGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACTACC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
14 CTCTGCTGTGGCAAGAACCCACTGGGTGATGACGAGGCTTCCACAACCGGTTCCAAGACGGAGACCAGCCAGGTGGCACC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
15 GGCCTAA
0
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
parents:
diff changeset
16 >gi|2734705|gb|U59921.1|BBU59921 Bufo bufo rhodopsin mRNA, complete cds
4
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
17 TCTTTCTAGTTTGGGGGGGGGGACTTTAAAGAGCCGCCAATATGAACGGAACAGAAGGCCCAAACTTTTACATACCCATG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
18 TCCAACAAGACTGGGGTGGTGCGAAGCCCCTTTGAATACCCTCAGTATTACCTGGCAGAGCCATGGCAATATTCCATTCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
19 GTGCGCGTACATGTTCCTGCTCATTCTACTTGGGTTCCCAATCAACTTCATGACCTTGTACGTCACCATCCAGCACAAGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
20 AGCTCCGGACACCCTTAAACTATATCCTGCTGAATTTGGCCTTTGCCAACCACTTCATGGTCCTGTGTGGATTCACGGTG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
21 ACAATGTACTCCTCAATGAACGGATACTTCATCCTCGGAGCCACCGGTTGCTATGTTGAAGGCTTCTTCGCTACCCTTGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
22 TGGTGAAATCGCCCTTTGGTCCCTGGTGGTCTTGGCCATTGAACGATACGTGGTCGTCTGTAAGCCCATGAGCAACTTCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
23 GATTTAGTGAGAACCATGCCGTCATGGGCGTAGCGTTCACCTGGATAATGGCTTTGTCCTGTGCTGTTCCTCCACTCCTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
24 GGATGGTCCAGGTACATCCCCGAGGGCATGCAGTGCTCCTGCGGAGTCGACTACTACACCCTGAAGCCCGAGGTCAACAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
25 CGAGTCCTTCGTCATCTACATGTTCGTCGTCCACTTCACCATCCCCCTGATTATCATTTTCTTCTGCTATGGCCGCCTGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
26 TGTGCACTGTGAAAGAGGCTGCAGCTCAACAGCAAGAGTCCGCCACCACCCAGAAGGCCGAGAAAGAGGTGACCAGGATG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
27 GTGATCATCATGGTGGTCTTCTTCCTTATCTGTTGGGTCCCCTACGCCTCTGTCGCTTTCTTCATCTTCAGCAATCAGGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
28 CTCTGAGTTCGGCCCCATCTTCATGACCGTCCCAGCTTTCTTTGCCAAGAGTTCTTCCATCTACAACCCCGTCATCTACA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
29 TCATGCTCAACAAGCAGTTCCGTAACTGCATGATCACCACCCTGTGCTGCGGCAAGAATCCCTTTGGAGAAGACGATGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
30 TCCTCTGCCGCCACCTCCAAGACAGAGGCTTCTTCTGTTTCTTCCAGCCAGGTGTCTCCTGCATAAGACCTTCCACCAGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
31 CCTGTCTCAGGGTCCGCTGCCTCACACAGCTCCCACCGCCCCAACTCCGTCTCCTGCTCGCTAAGGCGGCGAAGTTCCCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
32 TTCCATTACATAAAACGTATCTGTTCAAGAAAGGCGACGACGAAGGAGAAGAAGAGGAGCCCCCCCGAACCCCTTCGCTG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
33 CTGCTGAAAACGACTTGATTGCTTCTGCAACGCAACGGGGCCTTACGGCAGCGAAGGGGTTGTCATCCGGACGCGCCAAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
34 AATTCCTTCGAGACTGTAAATATCTTAAAGGAACCGTCCTGCTAGTTACCGACGCCGCTCCTGTAGCCGCCGTTCCCCCG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
35 CACTCCGGCCGGTTCATACCTCTTATTTTTTTGCAATGCAACAGAAAATAATATTTTTGTTCCCACGGCTTTTCCCGGTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
36 AGGTCTGGTAGTGGCGGAGATTGGCCGACCCCTCGCACCTGTAATAAAGCGCAG
0
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
parents:
diff changeset
37 >gi|283855845|gb|GQ290303.1| Cynopterus brachyotis voucher 20020434 rhodopsin (RHO) gene, exons 1 through 5 and partial cds
4
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
38 GTGCCCTTCTCCAACAAGACAGGCGTGGTGCGCAGTCCCTTCGAGCATCCACAGTACTACCTGGCCGAGCCATGGCAGTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
39 CTCCATGCTGGCCGCCTACATGTTTCTGCTGATCGTGCTCGGCTTCCCCATCAACTTCCTCACGCTCTATGTCACGGTTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
40 AGCACAAGAAGCTGCGTACGCCTCTCAACTACATCCTGCTCAACCTGGCCGTGGCCGACCTCTTCATGGTCTTCGGAGGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
41 TTCACCACCACCCTCTACACCTCCCTGCATGGATACTTTGTCTTCGGGCCTACGGGATGCAATCTGGAGGGCTTTTTTGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
42 CACCCTGGGAGGTATGAGCTGAGATGCGGGTAAGGAGGAGGCATAGAGGCATCTGGGAACAGTCCCAAGCTTGGGGTGAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
43 GGCTAAGAGGCCTTCTTCCTTGTTCTGTCATTGGCGTCGTCCGAAGCCCTCACTTAATCAACAAACAGTTTGGTGGTGAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
44 GCGCTGAGCTCCATTTGGAGAGGGCAGGTATCGAGCACTGTTTTATCCCCCCTGGAGTGGTGCCATTGCCTTGCTTTACA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
45 GCAAAGAAACTGAGGATGAGAGGAGTCGAGGGTCTTGCCAGGTCACATCATGGCAGAGACAGAGCTGAGTTTCAACCCTG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
46 CATCTATGTGCAGTTTCCCTTGGAGCAGCTATGTTAGGTCAGACCCACGGTGGGCACTGGGGAGAGAGCTGCACAAGACA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
47 GGTCCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
48 NNNNNNNNNNNNNNNNNNNNNNNNNNNTTCCTGATTGCCAGGAGTGATGTGCAGCGCAAATGTCTGAATTCCATTATTAT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
49 GTGCTCCTTCTTCCTCTGAGCCAAACATCCATCTTCATGGCTCCTAGAATTGGGTCCCACCCACATGAGCAGGTCATTTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
50 GTTTCCCTAGAGGGGAGAGGTCACTGCTGTGGAGGGAGGGAAGGTTCGTCCCGCTCCATGTTTCTGTTGTCTCTGCAATG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
51 CCTTTCTCTAGGGACTCTGCCTATTGCCCCAAGAAGGACACATTCTTCTGTAAAAACTCCCTCCTGGGTTCCCAGTCTAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
52 TCAAGACCTCTAAACTGATTTCCATGTCCCTCATGAACCCAAAGCTCTAACTGAATTAAACTTCTCAGGACTTACTCCAC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
53 TCTCCTCGTCCATCATGCAGCCCCTCTGCCCAGCACCCTATCTCCTCTTCTTCCCAGTGTCTGAGCCCACTGTACCCTGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
54 GACTTCGCTCCAGGCCTGCCCCAGGCTGCCTTCTCAGGTGCCCTCTCCCACATAGGAGGAGCACGGCCTCCTTAGACAGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
55 CGTGGGGTGCAGGTTGGTGGCATGCTGACTGATAGCTGACTGCCTTGCAGGTGAAATTGCCCTGTGGTCCTTGGTGGTCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
56 TGGCCATCGAGCGGTACGTGGTGGTATGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCCTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
57 GCCCTCACCTGGGTCATGGCACTGGCCTGCGCCGCGCCCCCGCTAGTCGGCTGGTCCAGGTAATGGCACTGAACAGAAGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
58 GAAGTGCCTCTGAGGTCTTCTTAGGGTCCCCCAGCTGGGACTCAAACCTAGGGCTGTCTGGTTCCAGGCACGGAACTGGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
59 GACTCCACTGGGGTTGGGGTTTAGGGCAAGGAAGGAGAGGATCAGACCCTAATGTTGTTACGTGGGTTGGTCCGCATGTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
60 AAGGAGAATCCAAGACACCCAATCCTTCACCTTGGCTGTGCCCCTAATCCTCATCTAAGCCAGGTTCAGATTCCAATCCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
61 CTTTGGCCCAGTGCTCCGTGGGAAGCTCCCTCTGACCTTGGGCCTCAGCGCCTGGGGTTGCTGAGCCTTCCTAGTATAGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
62 TGGTGACATCGTAGCCCCTGGGACCTGGATCCTGCCCAGTCTGCAGGCCATCATCTCCAAATGGGGCTGAGATGAGATGT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
63 GAGGAAAGAGGGGAGACAGTGGTTTGGAAAACTGGACTGGTGGCTTTTTTGGGTTTCCAGAGGACTCATCTTCCTCTGCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
64 TCTAGAATATTCCCACTCTCTCTTCCCTTTCCTCATTCTTCCTGGGTTATTTTTTTTTCCCTTTGCTGAATTCGAGCCCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
65 ATTCCCTCCAGCCTCTTTCCCTGTCTTATCTAGCCCAGTCCAGTTATATTCTCATAGGCAGAGGCAACAGATGCTCCAAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
66 TTTTCTGAGGTCGGTTCCAACATCGCCACCCTCTAAAATCAGTGAAACATCCTAACTACATGCCTCATAGTCCTCCTGTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
67 TCCAAAAACTGCAAAGATCTCCTGGTTACCCTGTATGCCCATCTTTGGGCTAGAAAATCCTCTCACCCTGTTAATAGTAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
68 GACCCTGGTTTGTACAAACTGCCTCAAACACAGAGTTTAGGGGCTTTTCCCTTCTCTCCGCCAACCTCTGACAGGCAGAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
69 TCTGAGGCCTGGCCTCCAGCTGCTGCGGGGAGCAGGTCTGGTAAAGAATCCTGTGCAGGTCAGTGGTATACAGGTCCTGT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
70 CAGGTGACAGCCTGGGCGAGAGACTGGAAAGTATCAGGATAACACGGCTGCCAGACGAACAACAAAACAACACTGAATTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
71 ACAAGGCGCATTCGAATCCTCTCTCAGTCCATTTGATCCTCAGTCACACAGCCGAGTAGACACTTTATCAACTCATTTAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
72 CAGAAAGGGAAAGTGAAGCCCAGAGCGAGGCCAGCAACGTGGCAGGTCACTCTGGTCATCTAGGGCCTGTTCCCAACTCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
73 TTCACATGTGGGTCTCCAATATGTTCCCTCCTGTCCCAATCTCTGCCGGCCCTCAGGTACATCCCAGAGGGCATGCAGTG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
74 CTCATGTGGAATCGACTACTACACCCTCAAGCCGGAGGTCAACAACGAGTCCTTTGTCATCTACATGTTCGTGGTCCACT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
75 TCACCATCCCTATGATTGTCATATTCTTTTGCTATGGACAGCTGGTCTTCACCGTCAAGGAGGTAAGGTCATGTGTTGGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
76 CACTGGGGACATGCACACTGAGTGAATGGAGCCCAGCTCCATTCCCAGAGTTGCCACAGTCTGGACACCTGACCTTGTGT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
77 CCCTGCAGGCAGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAGGTCACCCGTATGGTCATCATC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
78 ATGGTCATTGCTTTCCTAATCTGTTGGCTGCCGTATGCCGGCGTGGCATTCTACATCTTCACCCACCAGGGCTCTAACTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
79 TGGCCCCATCTTCATGACCCTCCCGGCATTCTTTGCCAAGTCGTCCTCCATCTACAACCCTGTCATCTATATCATGATGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
80 ACAAGCAGGTGCCAGGTGGTAGGGAGGGAGGGTCTGGGTCCCCCAGGCTGCAGGCACTGCCCACAGAGGACAAGCCACAT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
81 CCTTGACTAGGCAGACCCCAGTCTTCCCATCTGCAAAATTAGGCAGGGGAGTTCGTCTCCCCCAGGCATCAGAGACATCG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
82 GGGAGAAATGCACATTTCTGGAGATGAATCAGCATCTCAGGGTGGGCCCAGGAACCTGCACTTCTAAAAACCATTCCACA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
83 TGACTCTGAGGCTAGCATGAGAAGTGATGATCCACATGGTTCTGGAGGCCTGCTTTAAAAGTCAAGTGGTCAAAGTCCCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
84 AGCCTGGGAACGGGATGGTGCCAGTCTCCATTAAAGAGATCAAAAGGAGCTAGAAAGTCTTGTGATGAAAGATGAAGGGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
85 TAAAGCCGTCCTTTAACACAGATCAGTGATTTCTCTGCAGAATCCATGACCCAGTGGGAAAAAGTGGTCCCTGGAGTCAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
86 GCATATTGGATTCAAATCCTAGCTCTGCTATTTTCTAGCTATGTAACCTTGGGCAAGTCATCTCCCTTCTCTGTGCTTCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
87 GTTTCTTCTTTCATAGAAAGGGTAAAATCCCAAACTCTTGGGTTAAATGAGATAACTTACATAGCCCTTGATATGCAGAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
88 GCATTATGGAATGTCGTTAGTGACAAAGTTCCCTTGGGTTTGGTCCCTGGTATCTCTGGAGTGAGATTGCATATGTTCCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
89 TTCAGAGGGTCAGATTTGGGATGAGAGTGGAGGCTGCGAGGGCCTGAGTGGGAAGGGATTGGAGGCAAATCTCACCAACC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
90 ATGTCAGTTTGCTACACACACTTTGGGTGGACCCTGACCCTGACTCATGCTTCTTGCCTTCCAGTTCCGGAACTGCATGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
91 TCACTACCCTCTGCTGTGGCAAGAACCCACTGGGTGACGATGAGGCCTCCACCACTGCCTC
0
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
parents:
diff changeset
92 >gi|283855822|gb|GQ290312.1| Myotis ricketti voucher GQX10 rhodopsin (RHO) mRNA, partial cds
4
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
93 GTGCCCTTCTCCAACAAGACGGGTGTGGTGCGCAGCCCCTTCGAGTACCCGCAGTACTACCTGGCTGAGCCCTGGCAGTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
94 CTCCATGCTGGCTGCCTACATGTTTCTGCTGATCGTGCTCGGATTCCCCATCAACTTCCTCACGCTCTACGTCACCGTCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
95 AGCACAAGAAGCTGCGCACGCCTCTCAACTACATCCTGCTCAACCTGGCTGTGGCCAACCTCTTCATGGTCTTTGGAGGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
96 TTCACCACCACCCTGTATACCTCTATGCATGGATACTTCGTCTTCGGGGCCACGGGATGCAATCTGGAGGGCTTCTTTGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
97 CACGCTGGGCGGTGAAATCGCCCTGTGGTCCCTGGTGGTCCTGGCCATCGAGCGGTATGTGGTGGTCTGCAAGCCCATGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
98 GCAACTTCCGCTTTGGGGAGAACCACGCCATCATGGGCCTCGCCTTCACGTGGGTCATGGCACTGGCCTGCGCTGCACCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
99 CCACTAGCCGGCTGGTCCAGGTACATCCCAGAGGGCATGCAGTGCTCGTGTGGGATTGACTACTACACGCTCAAACCGGA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
100 GGTCAACAACGAGTCCTTCGTCATCTACATGTTCGTGGTCCACTTCACCATCCCCATGATTGTCATTTTCTTCTGCTACG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
101 GACAGCTGGTGTTCACAGTGAAGGAGGCGGCTGCCCAGCAGCAGGAGTCAGCCACCACCCAGAAGGCCGAGAAGGAAGTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
102 ACGCGCATGGTCATCATCATGGTCGTTGCGTTCCTAATCTGTTGGCTGCCCTACGCCAGCGTGGCATTCTACATCTTTAC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
103 CCACCAGGGCTCTAACTTTGGCCCTGTCTTCATGACCATCCCGGCATTCTTCGCCAAGTCATCCTCCATCTACAACCCGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
104 TCATCTATATCATGATGAACAAGCAGTTCCGGAACTGCATGCTCACCACCCTCTGCTGTGGCAAGAACCCACTGGGTGAT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
105 GACGAAGCATCCACCACTGCCTC
0
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
parents:
diff changeset
106 >gi|18148870|dbj|AB062417.1| Synthetic construct Bos taurus gene for rhodopsin, complete cds
4
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
107 ATGAACGGGACCGAGGGCCCAAACTTCTACGTGCCTTTCTCCAACAAGACGGGCGTCGTACGCAGCCCCTTCGAGGCGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
108 GCAGTACTACCTGGCTGAGCCATGGCAGTTCAGCATGCTGGCCGCCTACATGTTCCTGCTGATCATGCTTGGCTTCCCCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
109 TCAACTTCCTCACGCTGTACGTCACAGTCCAGCACAAGAAGCTGAGGACCCCCCTCAACTACATCCTGCTCAACCTGGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
110 GTGGCAGATCTCTTCATGGTGTTCGGGGGCTTCACCACCACCCTGTATACCTCTCTGCACGGGTACTTCGTGTTCGGTCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
111 GACGGGCTGCAACCTCGAGGGCTTCTTTGCCACCTTAGGCGGTGAAATTGCACTGTGGTCCTTGGTGGTGCTAGCCATCG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
112 AGCGGTACGTAGTGGTGTGCAAGCCCATGAGCAACTTCCGCTTCGGGGAGAACCACGCCATCATGGGCGTCGCATTCACC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
113 TGGGTCATGGCTCTGGCCTGTGCGGCCCCCCCCCTCGTCGGCTGGTCTAGATACATCCCGGAGGGGATGCAGTGCTCGTG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
114 CGGGATCGATTACTACACGCCCCACGAGGAGACCAACAATGAGTCGTTCGTCATCTACATGTTCGTTGTACACTTCATCA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
115 TCCCCCTGATTGTCATATTCTTCTGCTACGGGCAGCTGGTCTTCACCGTCAAGGAGGCTGCAGCCCAGCAGCAGGAGTCG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
116 GCCACCACTCAGAAGGCCGAGAAGGAGGTCACGCGTATGGTCATCATCATGGTCATCGCTTTCCTCATATGCTGGCTGCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
117 CTACGCAGGTGTGGCGTTCTACATCTTCACCCATCAGGGATCCGACTTTGGCCCCATCTTCATGACCATCCCGGCTTTCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
118 TTGCCAAGACGTCTGCCGTCTATAACCCCGTCATCTACATCATGATGAACAAGCAGTTCCGGAACTGCATGGTCACCACT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
119 CTCTGCTGTGGCAAGAACCCCCTAGGTGACGACGAGGCCTCCACGACCGTGTCCAAGACAGAGACCAGCCAAGTGGCCCC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
120 TGCCTAA
0
b828ca44a313 Uploaded v0.1.2 (previously only on the Test Tool Shed)
peterjc
parents:
diff changeset
121 >gi|12583664|dbj|AB043817.1| Conger myriaster conf gene for fresh water form rod opsin, complete cds
4
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
122 CCGCTACTGACGAACCGCAACCATGAACGGCACTGAGGGACCTAACTTCTACATCCCCATGTCAAACGCCACTGGTGTAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
123 TGAGGAGTCCATTTGAATACCCGCAGTACTACCTTGCAGAACCATGGGCTTTCTCAGCTCTGTCTGCCTACATGTTCTTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
124 CTGATTATCGCCGGATTCCCCATCAACTTCCTCACCCTGTATGTCACCATCGAACATAAGAAACTGAGGACCCCACTGAA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
125 CTACATTCTGCTGAACCTGGCCGTGGCCGACCTCTTCATGGTGTTTGGCGGATTCACCACCACGATGTACACCTCCATGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
126 ACGGCTACTTTGTCTTCGGCCCCACCGGCTGCAACATCGAAGGGTTCTTCGCCACCCTCGGCGGCGAGATTGCCCTCTGG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
127 TGCCTCGTTGTCCTGGCCATTGAAAGGTGGATGGTCGTCTGCAAGCCAGTGACCAATTTCCGCTTCGGTGAGAGCCATGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
128 CATCATGGGTGTCATGGTGACCTGGACCATGGCATTGGCCTGTGCCCTCCCCCCTCTCTTCGGCTGGTCTCGGTACATTC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
129 CGGAAGGTCTGCAGTGCTCGTGCGGGATCGACTACTATACCCGGGCGCCTGGGATCAACAATGAGTCCTTTGTGATCTAC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
130 ATGTTTACCTGCCACTTCTCCATCCCACTCGCCGTCATCTCTTTCTGCTACGGCCGACTGGTGTGCACCGTCAAAGAGGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
131 CGCTGCCCAGCAACAGGAGTCCGAGACCACCCAGAGGGCTGAGCGGGAGGTCACCCGCATGGTCGTCATCATGGTCATCT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
132 CCTTCCTGGTCTGCTGGGTGCCCTATGCCAGTGTGGCCTGGTACATCTTTACCCACCAGGGAAGCACTTTTGGGCCCATC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
133 TTCATGACCATTCCATCCTTCTTTGCCAAGAGTTCAGCCCTCTACAACCCCATGATCTACATCTGCATGAACAAGCAGTT
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
134 CCGCCATTGCATGATCACCACCCTCTGCTGTGGGAAGAACCCCTTCGAGGAGGAGGATGGAGCGTCCGCCACTAGCTCTA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
135 AAACTGAGGCTTCATCCGTGTCCTCCAGCTCTGTCTCCCCGGCATAAACCTTGTTTGACCGAACACCACGCATCAACACA
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
136 AAGACCAAGAATGCTGACTAAATGCTAACATTTCAGGGAAATCCAAAGACTTTTTACTATTTTTTTACACAACCATATAG
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
137 GTTGCAAACAGAGGTTTAGCCCTGTTTACAGGTTGTCATCAATGTGATGTCAGTATGTACAATATAGTCAACTTGATAGC
d8d9a9069586 v0.1.11 using BLAST+ 2.5.0 and Biopython 1.67
peterjc
parents: 0
diff changeset
138 AAGTTGTTGGCTTATTTCAGATTGTATGGGCAATGTAATCAACCATATGTGAAATAAATTGCAA