# HG changeset patch
# User peterjc
# Date 1670342593 0
# Node ID b2f91cbed8d986c45247073428d01adc2a5c68c1
# Parent  8f4500f6f2aae46b6f37835d3e104c76cac8d598
v0.3.0  - Updated to BLAST+ 2.9.0 via conda; removed legacy tool packages.

diff -r 8f4500f6f2aa -r b2f91cbed8d9 test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular
--- a/test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular	Tue Dec 06 15:53:36 2022 +0000
+++ b/test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular	Tue Dec 06 16:03:13 2022 +0000
@@ -1,2 +1,2 @@
 #A_id	B_id	A_length	B_length	A_qcovhsp	B_qcovhsp	length	pident	bitscore
-ENA|BC112106|BC112106.1	gi|57163782|ref|NM_001009242.1|	1213	1047	86	100	1047	92.073	1514
+ENA|BC112106|BC112106.1	gi|57163782|ref|NM_001009242.1|	1213	1047	86	100	1047	92.073	1515
diff -r 8f4500f6f2aa -r b2f91cbed8d9 tools/blast_rbh/README.rst
--- a/tools/blast_rbh/README.rst	Tue Dec 06 15:53:36 2022 +0000
+++ b/tools/blast_rbh/README.rst	Tue Dec 06 16:03:13 2022 +0000
@@ -95,6 +95,7 @@
 v0.1.12 - Use ``<command detect_errors="aggressive">`` (internal change only).
         - Single quote command line arguments (internal change only).
 v0.2.0  - Refactored to use more than one Python file (internal change only).
+v0.3.0  - Updated to BLAST+ 2.9.0 via conda; removed legacy tool packages.
 ======= ======================================================================
 
 
diff -r 8f4500f6f2aa -r b2f91cbed8d9 tools/blast_rbh/blast_rbh.xml
--- a/tools/blast_rbh/blast_rbh.xml	Tue Dec 06 15:53:36 2022 +0000
+++ b/tools/blast_rbh/blast_rbh.xml	Tue Dec 06 16:03:13 2022 +0000
@@ -1,8 +1,8 @@
-<tool id="blast_reciprocal_best_hits" name="BLAST Reciprocal Best Hits (RBH)" version="0.2.0">
+<tool id="blast_reciprocal_best_hits" name="BLAST Reciprocal Best Hits (RBH)" version="0.3.0">
     <description>from two FASTA files</description>
     <requirements>
-        <requirement type="package" version="1.67">biopython</requirement>
-        <requirement type="package" version="2.5.0">blast</requirement>
+        <requirement type="package" version="1.77">biopython</requirement>
+        <requirement type="package" version="2.9.0">blast</requirement>
     </requirements>
     <version_command>
 python $__tool_directory__/blast_rbh.py --version
diff -r 8f4500f6f2aa -r b2f91cbed8d9 tools/blast_rbh/tool_dependencies.xml
--- a/tools/blast_rbh/tool_dependencies.xml	Tue Dec 06 15:53:36 2022 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,9 +0,0 @@
-<?xml version="1.0" ?>
-<tool_dependency>
-    <package name="biopython" version="1.67">
-        <repository name="package_biopython_1_67" owner="biopython" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a12f73c3b116"/>
-    </package>
-    <package name="blast" version="2.5.0">
-        <repository name="package_blast_plus_2_5_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5dd2b68c7d04"/>
-    </package>
-</tool_dependency>
\ No newline at end of file