Mercurial > repos > peterjc > blast_rbh
changeset 6:b2f91cbed8d9 draft default tip
v0.3.0 - Updated to BLAST+ 2.9.0 via conda; removed legacy tool packages.
| author | peterjc |
|---|---|
| date | Tue, 06 Dec 2022 16:03:13 +0000 |
| parents | 8f4500f6f2aa |
| children | |
| files | test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular tools/blast_rbh/README.rst tools/blast_rbh/blast_rbh.xml tools/blast_rbh/tool_dependencies.xml |
| diffstat | 4 files changed, 5 insertions(+), 13 deletions(-) [+] |
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--- a/test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular Tue Dec 06 15:53:36 2022 +0000 +++ b/test-data/rbh_blastn_three_human_mRNA_vs_rhodopsin_nucs.tabular Tue Dec 06 16:03:13 2022 +0000 @@ -1,2 +1,2 @@ #A_id B_id A_length B_length A_qcovhsp B_qcovhsp length pident bitscore -ENA|BC112106|BC112106.1 gi|57163782|ref|NM_001009242.1| 1213 1047 86 100 1047 92.073 1514 +ENA|BC112106|BC112106.1 gi|57163782|ref|NM_001009242.1| 1213 1047 86 100 1047 92.073 1515
--- a/tools/blast_rbh/README.rst Tue Dec 06 15:53:36 2022 +0000 +++ b/tools/blast_rbh/README.rst Tue Dec 06 16:03:13 2022 +0000 @@ -95,6 +95,7 @@ v0.1.12 - Use ``<command detect_errors="aggressive">`` (internal change only). - Single quote command line arguments (internal change only). v0.2.0 - Refactored to use more than one Python file (internal change only). +v0.3.0 - Updated to BLAST+ 2.9.0 via conda; removed legacy tool packages. ======= ======================================================================
--- a/tools/blast_rbh/blast_rbh.xml Tue Dec 06 15:53:36 2022 +0000 +++ b/tools/blast_rbh/blast_rbh.xml Tue Dec 06 16:03:13 2022 +0000 @@ -1,8 +1,8 @@ -<tool id="blast_reciprocal_best_hits" name="BLAST Reciprocal Best Hits (RBH)" version="0.2.0"> +<tool id="blast_reciprocal_best_hits" name="BLAST Reciprocal Best Hits (RBH)" version="0.3.0"> <description>from two FASTA files</description> <requirements> - <requirement type="package" version="1.67">biopython</requirement> - <requirement type="package" version="2.5.0">blast</requirement> + <requirement type="package" version="1.77">biopython</requirement> + <requirement type="package" version="2.9.0">blast</requirement> </requirements> <version_command> python $__tool_directory__/blast_rbh.py --version
--- a/tools/blast_rbh/tool_dependencies.xml Tue Dec 06 15:53:36 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,9 +0,0 @@ -<?xml version="1.0" ?> -<tool_dependency> - <package name="biopython" version="1.67"> - <repository name="package_biopython_1_67" owner="biopython" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="a12f73c3b116"/> - </package> - <package name="blast" version="2.5.0"> - <repository name="package_blast_plus_2_5_0" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5dd2b68c7d04"/> - </package> -</tool_dependency> \ No newline at end of file