Mercurial > repos > peterjc > blast_top_hit_species
changeset 1:165f0b05fa25 draft
Uploaded
| author | peterjc |
|---|---|
| date | Mon, 30 Mar 2015 11:34:25 -0400 |
| parents | 68d65aeb3567 |
| children | db0c1bb92308 |
| files | README.rst |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/README.rst Mon Mar 30 11:25:10 2015 -0400 +++ b/README.rst Mon Mar 30 11:34:25 2015 -0400 @@ -20,7 +20,7 @@ This Galaxy workflow (file ``blast_top_hit_species.ga``) is intended for an initial assessment of a transcriptome assembly to give a crude indication of -any major contaimination present based on the species of the top BLAST hit +any major contamination present based on the species of the top BLAST hit of 1000 representative sequences. .. image:: https://raw.githubusercontent.com/peterjc/galaxy_blast/master/workflows/blast_top_hit_species/blast_top_hit_species.png @@ -88,8 +88,8 @@ ========== Species assignment by top BLAST hit is not suitable for any in depth -analysis. It is particularly prone to false positives where contaiminants -in public datasets are mislabled. See for example Ed Yong (2015), +analysis. It is particularly prone to false positives where contaminants +in public datasets are mislabelled. See for example Ed Yong (2015), "There's No Plague on the NYC Subway. No Platypuses Either.": http://phenomena.nationalgeographic.com/2015/02/10/theres-no-plague-on-the-nyc-subway-no-platypuses-either/